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Template:  NC_016002.1 strand: - 965127-965231 ref: 965126-965232
Variable:  NC_016002.1 strand: - 965823-965927 alnlen 104 mutations 11 involve-A 11 involve-T 0

965231     CGACGCAGTACTCGCCCAACAACGCCTGGAACCAGAACTTCGACGATGGTAACCAGAACAACGACCACAAGGACAACCAGTACCGTGCGCGAGCCGTCCGCAGA (revcomp)
           :::::::::::::::::::: ::::::::  ::::  ::::: ::::::: ::::: :: ::::::::::::::  ::::::::::::::::::::::::::::
965927     CGACGCAGTACTCGCCCAACTACGCCTGGCTCCAGGTCTTCGGCGATGGTTACCAGTACTACGACCACAAGGACCGCCAGTACCGTGCGCGAGCCGTCCGCAGA (revcomp)
Template:  NC_016002.1 strand: - 965127-965231 ref: 965126-965232
Variable:  NC_016002.1 strand: - 966491-966595 alnlen 104 mutations 11 involve-A 11 involve-T 0

965231     CGACGCAGTACTCGCCCAACAACGCCTGGAACCAGAACTTCGACGATGGTAACCAGAACAACGACCACAAGGACAACCAGTACCGTGCGCGAGCCGTCCGCAGA (revcomp)
           ::::::::: ::::::: :: ::::::::  ::::: ::::::::::::: ::::::::  ::::::::::::: :::::: ::::::::::::::::::::::
966595     CGACGCAGTTCTCGCCCGACTACGCCTGGGGCCAGACCTTCGACGATGGTTACCAGAACGTCGACCACAAGGACTACCAGTGCCGTGCGCGAGCCGTCCGCAGA (revcomp)
Template:  NC_016002.1 strand: - 965127-965229 ref: 965126-965232
Variable:  NC_016002.1 strand: + 596856-596958 alnlen 102 mutations 15 involve-A 14 involve-T 1
(on different strand)
965229     ACGCAGTACTCGCCCAACAACGCCTGGAACCAGAACTTCGACGATGGTAACCAGAACAACGACCACAAGGACAACCAGTACCGTGCGCGAGCCGTCCGCAGA (revcomp)
           ::::::::::::::: :: :::::::: ::::: ::::::::::::::  :::: ::  :: :: ::::: :: ::::  ::::::::::::::::::::::
596856     ACGCAGTACTCGCCCGACTACGCCTGGTACCAGGACTTCGACGATGGTGGCCAGTACGGCGGCCGCAAGGTCATCCAGACCCGTGCGCGAGCCGTCCGCAGA 
Template:  NC_016002.1 strand: - 965129-965229 ref: 965126-965232
Variable:  NC_016002.1 strand: + 596192-596292 alnlen 100 mutations 20 involve-A 17 involve-T 2
(on different strand)
965229     ACGCAGTACTCGCCCAACAACGCCTGGAACCAGAACTTCGACGATGGTAACCAGAACAACGACCACAAGGACAACCAGTACCGTGCGCGAGCCGTCCGCA (revcomp)
           ::::::::::::::: :: ::::::::  ::::  ::::: :: :::   ::::  : ::  ::::::::::  ::::  ::::::::::::::::::::
596192     ACGCAGTACTCGCCCTACTACGCCTGGTTCCAGGGCTTCGTCGGTGGCCTCCAGGGCGACTGCCACAAGGACGGCCAGGGCCGTGCGCGAGCCGTCCGCA 
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