Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  NC_016002.1 strand: - 965127-965231 ref: 965126-965232

Variable:  NC_016002.1 strand: - 965823-965927 alnlen 104 mutations 11 involve-A 11 involve-T 0

CGACGCAGTACTCGCCCAACAACGCCTGGAACCAGAACTTCGACGATGGTAACCAGAACAACGACCACAAGGACAACCAGTACCGTGCGCGAGCCGTCCGCAGA (Template)
CGACGCAGTACTCGCCCAACTACGCCTGGCTCCAGGTCTTCGGCGATGGTTACCAGTACTACGACCACAAGGACCGCCAGTACCGTGCGCGAGCCGTCCGCAGA (Variable)
Template:  NC_016002.1 strand: - 965127-965231 ref: 965126-965232

Variable:  NC_016002.1 strand: - 966491-966595 alnlen 104 mutations 11 involve-A 11 involve-T 0

CGACGCAGTACTCGCCCAACAACGCCTGGAACCAGAACTTCGACGATGGTAACCAGAACAACGACCACAAGGACAACCAGTACCGTGCGCGAGCCGTCCGCAGA (Template)
CGACGCAGTTCTCGCCCGACTACGCCTGGGGCCAGACCTTCGACGATGGTTACCAGAACGTCGACCACAAGGACTACCAGTGCCGTGCGCGAGCCGTCCGCAGA (Variable)
Template:  NC_016002.1 strand: - 965127-965229 ref: 965126-965232

Variable:  NC_016002.1 strand: + 596856-596958 alnlen 102 mutations 15 involve-A 14 involve-T 1

ACGCAGTACTCGCCCAACAACGCCTGGAACCAGAACTTCGACGATGGTAACCAGAACAACGACCACAAGGACAACCAGTACCGTGCGCGAGCCGTCCGCAGA (Template)
ACGCAGTACTCGCCCGACTACGCCTGGTACCAGGACTTCGACGATGGTGGCCAGTACGGCGGCCGCAAGGTCATCCAGACCCGTGCGCGAGCCGTCCGCAGA (Variable)
Template:  NC_016002.1 strand: - 965129-965229 ref: 965126-965232

Variable:  NC_016002.1 strand: + 596192-596292 alnlen 100 mutations 20 involve-A 17 involve-T 2

ACGCAGTACTCGCCCAACAACGCCTGGAACCAGAACTTCGACGATGGTAACCAGAACAACGACCACAAGGACAACCAGTACCGTGCGCGAGCCGTCCGCA (Template)
ACGCAGTACTCGCCCTACTACGCCTGGTTCCAGGGCTTCGTCGGTGGCCTCCAGGGCGACTGCCACAAGGACGGCCAGGGCCGTGCGCGAGCCGTCCGCA (Variable)