Template:  NZ_AAXW01000031.1 strand: + 41884-42005 ref: 41882-42005
Variable:  NZ_AAXW01000031.1 strand: + 42899-43020 alnlen 121 mutations 19 involve-A 18 involve-T 0

41884      ACGAGGCGGTTCCTGGATCAACAATCCTAATCAATGCCGTTCCGCCTACCGCAACAACAATAATCCGCGCAACGACAACAACAATTATGGGTTGCGTGTAGTGTGTTGTCCCCCCAGCACT 
           :::::::::::::::: ::  : ::::: ::: ::::::::::::::::::: ::  :  ::::::::::  ::::  : :: ::: :::::::::::::::::::::::::::::: :::
42899      ACGAGGCGGTTCCTGGTTCCCCGATCCTTATCGATGCCGTTCCGCCTACCGCGACGGCTTTAATCCGCGCTTCGACTTCTACGATTTTGGGTTGCGTGTAGTGTGTTGTCCCCCCAGGACT 
Template:  NZ_AAXW01000031.1 strand: + 41884-42005 ref: 41882-42005
Variable:  NZ_AAXW01000031.1 strand: + 40036-40157 alnlen 121 mutations 20 involve-A 18 involve-T 0

41884      ACGAGGCGGTTCCTGGATCAACAATCCTAATCAATGCCGTTCCGCCTACCGCAACAACAATAATCCGCGCAACGACAACAACAATTATGGGTTGCGTGTAGTGTGTTGTCCCCCCAGCACT 
           :::::::::::::::::::  :: :::: :::  ::::::::::::: ::::::: :: ::  ::::::: ::: :: : ::  :: ::::::::::::::::::::::::::: :: :::
40036      ACGAGGCGGTTCCTGGATCGGCATTCCTTATCTTTGCCGTTCCGCCTTCCGCAACTACGATGCTCCGCGCGACGGCAGCTACGGTTTTGGGTTGCGTGTAGTGTGTTGTCCCCCAAGGACT