Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  NZ_CAKP01000036.1 strand: + 49803-49914 ref: 49803-49914

Variable:  NZ_CAKP01000036.1 strand: + 49233-49344 alnlen 111 mutations 12 involve-A 12 involve-T 0

TTCCCTCTTCGTGGGGCCAACTGGAACAACGGTGCAAGTGCTGGGGTGTTCGCTTTGAACTTGAACAACCCTCGTTCGAATGCCAACAGCAACATTGGTTTCCGCTCCGCT (Template)
TTCCCTCTTCGTGGGGCCCACTGGCTCGACGGTGCAAGTGCTGGGGTGTTCGCTTTGGCCTTGAACCTCCCTCGTTCGCATGCCAGCGGCAACTTTGGTTTCCGCTCCGCT (Variable)