Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  NZ_JH376870.1 strand: + 861733-861819 ref: 861733-861819

Variable:  NZ_JH376870.1 strand: + 861145-861231 alnlen 86 mutations 14 involve-A 13 involve-T 0

GCTTCTTACATCCAGTATGTCAACTCCAACGGCAACGTGAACTACAACGACTGTGGTTGGAACGATAGGGGTGTTCGCCCGTTCTG (Template)
GCTTCTTGCGTCCGGTGTGTCCGCTCCGACGGCTACGTGAGCTACCGCGACTGTGGTTGGGACGTTAGGGGTGTTCGCCCGTTTTG (Variable)
Template:  NZ_JH376870.1 strand: + 861733-861819 ref: 861733-861819

Variable:  NZ_JH376870.1 strand: + 841585-841671 alnlen 86 mutations 17 involve-A 15 involve-T 1

GCTTCTTACATCCAGTATGTCAACTCCAACGGCAACGTGAACTACAACGACTGTGGTTGGAACGATAGGGGTGTTCGCCCGTTCTG (Template)
GCTTCTGGCGTCCGGTGTGTCGACTCCGACGGCAGCGTGGGCTGCGTCGGCTGTGGTTGGTACGATGGGGGTGTTCGCCCGTTTTG (Variable)