myDGR


Click here to see the grouping of predicted DGRs based on RT similarity

myDGR report for 5CVRmeJv

Seq: JQ680356.1 (43586 bp)

Download:  annotation in gff; reverse transcriptase (RT); target gene; accessory gene

Explore:   TR-VR alignment (colored, MSA); domain organization of the target protein(s); similar RTs

Visualize: summary of the putative DGR system(s) (explain)

Overview 1 Locus 1: 27551-43549 bp Zoom in on locus 1 Feature: CDS Location: 27551-28393 bp Feature: CDS Location: 29423-29788 bp Feature: CDS Location: 29800-30204 bp Feature: CDS Location: 30140-30337 bp Feature: CDS Location: 31435-31638 bp Feature: CDS Location: 31689-31883 bp Feature: CDS Location: 31957-32235 bp Feature: CDS Location: 32307-32969 bp Feature: CDS Location: 33135-34355 bp Feature: CDS Location: 34285-34599 bp Feature: CDS Location: 34705-35370 bp Feature: CDS Location: 35692-35970 bp Feature: CDS Location: 36397-36708 bp Feature: CDS Location: 36720-37121 bp Feature: CDS Location: 37111-37449 bp Feature: RT Des: DGR reverse transcriptase Location: 37651-38658 bp Feature: CDS Location: 38676-38972 bp Feature: accessory Des: AVD Location: 39019-39420 bp Feature: target Des: target gene diversified by DGR Location: 39474-40577 bp Feature: CDS Location: 40570-41013 bp Feature: CDS Location: 41028-41816 bp Feature: CDS Location: 41817-42434 bp Feature: CDS Location: 42447-42653 bp Feature: CDS Location: 42662-43549 bp Sorry, your browser does not support inline SVG.
Seq: JQ680353.1 (19282 bp)

Download:  annotation in gff; reverse transcriptase (RT); target gene; accessory gene

Explore:   TR-VR alignment (colored, MSA); domain organization of the target protein(s); similar RTs

Visualize: summary of the putative DGR system(s) (explain)

Feature: CDS Location: 3-299 bp Feature: CDS Location: 292-702 bp Feature: CDS Location: 923-1654 bp Feature: CDS Location: 1667-1939 bp Feature: CDS Location: 1942-2214 bp Feature: CDS Location: 2832-3143 bp Feature: CDS Location: 3143-3979 bp Feature: CDS Location: 3972-4775 bp Feature: CDS Location: 4971-5183 bp Feature: CDS Location: 5281-6711 bp Feature: CDS Location: 6767-6970 bp Feature: CDS Location: 7023-7217 bp Feature: CDS Location: 7291-7569 bp Feature: CDS Location: 7641-8303 bp Feature: CDS Location: 9234-9827 bp Feature: CDS Location: 10185-11513 bp Feature: CDS Location: 11589-11900 bp Feature: CDS Location: 11912-12313 bp Feature: CDS Location: 12303-12641 bp Feature: RT Des: DGR reverse transcriptase Location: 12843-13850 bp Feature: CDS Location: 13868-14164 bp Feature: accessory Des: AVD Location: 14211-14612 bp Feature: target Des: target gene diversified by DGR Location: 14666-15769 bp Feature: CDS Location: 15762-16205 bp Feature: CDS Location: 16220-17008 bp Feature: CDS Location: 17009-17626 bp Feature: CDS Location: 17640-17846 bp Feature: CDS Location: 17857-18744 bp Sorry, your browser does not support inline SVG.
Seq: JQ680350.1 (34307 bp)

Download:  annotation in gff; reverse transcriptase (RT); target gene; accessory gene

Explore:   TR-VR alignment (colored, MSA); domain organization of the target protein(s); similar RTs

Visualize: summary of the putative DGR system(s) (explain)

Overview 1 Locus 1: 6605-27355 bp Zoom in on locus 1 Feature: CDS Location: 6605-6967 bp Feature: CDS Location: 6954-7643 bp Feature: CDS Location: 7663-7869 bp Feature: CDS Location: 8061-8342 bp Feature: CDS Location: 8342-8557 bp Feature: CDS Location: 8574-8720 bp Feature: CDS Location: 8723-9694 bp Feature: CDS Location: 10080-10664 bp Feature: CDS Location: 10694-10885 bp Feature: CDS Location: 11068-12102 bp Feature: CDS Location: 12132-12407 bp Feature: CDS Location: 12423-12617 bp Feature: CDS Location: 12662-12859 bp Feature: CDS Location: 12983-13129 bp Feature: CDS Location: 13290-13700 bp Feature: CDS Location: 13842-14084 bp Feature: CDS Location: 14893-15243 bp Feature: CDS Location: 15568-15804 bp Feature: CDS Location: 15834-16148 bp Feature: RT Des: DGR reverse transcriptase Location: 16233-17285 bp Feature: CDS Location: 17482-17610 bp Feature: accessory Des: Avd_like Location: 17616-18032 bp Feature: target Des: target gene diversified by DGR Location: 18085-19185 bp Feature: CDS Location: 19185-19655 bp Feature: CDS Location: 19652-20722 bp Feature: CDS Location: 20744-21790 bp Feature: CDS Location: 21795-23162 bp Feature: CDS Location: 23261-23407 bp Feature: CDS Location: 23850-24005 bp Feature: CDS Location: 24180-25055 bp Feature: CDS Location: 25676-25909 bp Feature: CDS Location: 26103-26378 bp Feature: CDS Location: 26381-26737 bp Feature: CDS Location: 26804-27355 bp Sorry, your browser does not support inline SVG.