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Template:  NC_003272.1 strand: + 4212414-4212550 ref: 4212414-4212550
Variable:  NC_003272.1 strand: + 4209684-4209820 alnlen 136 mutations 21 involve-A 19 involve-T 1

4212414    TGCGGGGCGGCTCCTGGAACAACAATCCTGAAAACTGCCGTTCCGCGTCCCGCAACAACAACAATAGGGCGGAGCGCGACAACATCAACAACAATATTGGTTTTCGTGTTGTCTGCGCGTTCGGGAGTACTCTTCA 
           ::::::::::::::::: :: ::  :::::::  :::::::::::::::::::  :: :  ::::::::::: :::::::  ::::  : ::: : ::::::::::::::::::::::::::::::: : ::::::
4209684    TGCGGGGCGGCTCCTGGGACGACCTTCCTGAAGGCTGCCGTTCCGCGTCCCGCCTCAGCCTCAATAGGGCGGTGCGCGACCTCATCCTCTACAGTTTTGGTTTTCGTGTTGTCTGCGCGTTCGGGAGGATTCTTCA 
Template:  NC_003272.1 strand: + 4212414-4212550 ref: 4212414-4212550
Variable:  NC_003272.1 strand: + 4210622-4210758 alnlen 136 mutations 23 involve-A 20 involve-T 2

4212414    TGCGGGGCGGCTCCTGGAACAACAATCCTGAAAACTGCCGTTCCGCGTCCCGCAACAACAACAATAGGGCGGAGCGCGACAACATCAACAACAATATTGGTTTTCGTGTTGTCTGCGCGTTCGGGAGTACTCTTCA 
           :::::::::::::::::: :  :  ::::: :  :::::::::::::::::::  ::::::: ::::::::: ::::: : ::  : :: ::  : ::::::::::::::::::::::::::::::: ::: ::::
4210622    TGCGGGGCGGCTCCTGGAGCTCCTCTCCTGTAGTCTGCCGTTCCGCGTCCCGCGGCAACAACGATAGGGCGGGGCGCGTCTACCGCTACTACGCTGTTGGTTTTCGTGTTGTCTGCGCGTTCGGGAGGACTTTTCA 
Template:  NC_003272.1 strand: - 5986361-5986485 ref: 5986362-5986486
Variable:  NC_003272.1 strand: - 5988228-5988352 alnlen 124 mutations 21 involve-A 13 involve-T 2

5986485    CGACTGCTGCGCGGTGGTTCGTGGAACAACAATCCCAGGAATTGCCGTTCGGCGAATCGCAACAGGAACGCGCGTGACAACAGGAACAACAACGTAGGTTTTCGGGTTGTGGTTGTGCGGGGCA (revcomp)
           :: :::::::: ::::::::::::::: :: ::::::::  ::::::::::  :: ::::  ::: ::: :::: ::: :::::::: :   ::: :::: :::::::::::::::::::::::
5988352    CGTCTGCTGCGTGGTGGTTCGTGGAACTACTATCCCAGGGGTTGCCGTTCGTTGAGTCGCCTCAGTAACACGCGCGACGACAGGAACGAGCGCGTGGGTTGTCGGGTTGTGGTTGTGCGGGGCA (revcomp)
Template:  NC_003272.1 strand: - 5986381-5986482 ref: 5986362-5986486
Variable:  NC_003272.1 strand: - 3896383-3896484 alnlen 101 mutations 30 involve-A 15 involve-T 4

5986482    CTGCTGCGCGGTGGTTCGTGGAACAACAATCCCAGGAATTGCCGTTCGGCGAATCGCAACAGGAACGCGCGTGACAACAGGAACAACAACGTAGGTTTTCG (revcomp)
           ::: :::: :: ::::::::: ::: : :: ::::::  :: :: :  ::  ::::: ::: : ::::::: :   :  ::  :  ::: :: ::::::::
3896484    CTGGTGCGTGGCGGTTCGTGGCACAGCCATGCCAGGAGCTGTCGCTGTGCTTATCGCGACATGCACGCGCGCGCGTATCGGCTCTTCAATGTTGGTTTTCG (revcomp)
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