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Template:  AE017226.1 strand: - 2304689-2304826 ref: 2304672-2304826
Variable:  AE017226.1 strand: - 2541064-2541201 alnlen 137 mutations 23 involve-A 19 involve-T 2

2304826    GCCGCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCC (revcomp)
           ::::::::::::::::::::::::  :::::::::::::::: ::::: ::::: :   ::::::::: ::::  :::  ::::  ::  :::: :::::::  ::::  ::::::::::::::::::::: :::::
2541201    GCCGCGTCAGGCTCTAACCGTGTTTTACGCGGCGGCAGCTGGGACAACTACGCGGAGGGCTGCACTGTGGGCACCCGGGGTAACGGCAACCCTGGCAACAGGGGCAACCTTCTTGGCTTCCGCTTGGCTTGCCGGCC (revcomp)
Template:  AE017226.1 strand: - 2304682-2304826 ref: 2304672-2304826
Variable:  AE017226.1 strand: - 2125634-2125778 alnlen 144 mutations 26 involve-A 21 involve-T 3

2304826    GCCGCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCCCTTGAGC (revcomp)
           :::::::: ::::::  ::::::: :::::::::::::::::  :::: ::::: ::  :::::::::::::  :::: :   :  :: ::::: :: ::::: : ::::::::::::::::: ::::::::::::: : ::::
2125778    GCCGCGTCGGGCTCTGCCCGTGTTGAACGCGGCGGCAGCTGGCTCAACTACGCGTACGGCTGCACTGTAGGCGTACGGTACTGCGTCACTCCTGGCAGCAGGAGCGACAATCTTGGCTTCCGCCTGGCTTGTCGGCCATAGAGC (revcomp)
Template:  AE017226.1 strand: - 2304679-2304826 ref: 2304672-2304826
Variable:  AE017226.1 strand: + 604653-604800 alnlen 147 mutations 27 involve-A 19 involve-T 6
(on different strand)
2304826    GCCGCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCCCTTGAGCTCA (revcomp)
           :::::::::::: :: :::: :: :  ::::::::::: :::  :  :: ::::  :  :::::::::::::: :::: :  :: :::::::::::: :::: ::::: :::::::::::::: ::::::: :: ::::::::::::
604653     GCCGCGTCAGGCCCTTACCGCGTCAGGCGCGGCGGCAGTTGGGGCGGCAGCGCGGGCGGCTGCACTGTAGGCAGACGGGAGGACTACAGTCCTGACAGCAGGTACAACTATCTTGGCTTCCGCCTGGCTTGGCG-CCCTTGAGCTCA 
Template:  AE017226.1 strand: - 2304689-2304825 ref: 2304672-2304826
Variable:  AE017226.1 strand: - 2305023-2305159 alnlen 136 mutations 26 involve-A 23 involve-T 3

2304825    CCGCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCC (revcomp)
           ::::::::::::::  :::::::  ::::::::::::::::  :  :: :::: :: ::::: :::::::: :::::   :::: :::::::: :  ::::  :: : :::::::::::::: ::::::: :::::
2305159    CCGCGTCAGGCTCTGGCCGTGTTTTACGCGGCGGCAGCTGGGCCGGCAGCGCGGACTACTGCGCTGTAGGCGAACGGGTCAACATCAGTCCTGGCGTCAGGTGCAGCGATCTTGGCTTCCGCCTGGCTTGCCGGCC (revcomp)
Template:  AE017226.1 strand: - 2304675-2304823 ref: 2304672-2304826
Variable:  AE017226.1 strand: + 968242-968390 alnlen 148 mutations 30 involve-A 22 involve-T 4
(on different strand)
2304823    GCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCCCTTGAGCTCACACA (revcomp)
           ::::: :: ::: :::: ::   :::::::::::: ::: ::  : ::::: :: ::::::::::::::  ::::    :: ::::::::::: :: ::: :  : :::::::::::::::::::::: ::::: ::::: :::::::
968242     GCGTCGGGTTCTTACCGCGTCCTACGCGGCGGCAGTTGGTACTTCTACGCGCACTACTGCACTGTAGGCGTACGGGGCTACTACAGTCCTGACTACTGGAGCTTCTATCTTGGCTTCCGCTTGGCTTGCCGGCC-TTGAGTTCACACA 
Template:  AE017226.1 strand: - 2304689-2304826 ref: 2304672-2304826
Variable:  AE017226.1 strand: + 1085814-1085951 alnlen 137 mutations 28 involve-A 20 involve-T 2
(on different strand)
2304826    GCCGCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCC (revcomp)
           ::::: ::::::::: ::::::::  :::::::::::::::: :: : : :::::: :::::::::::::::   :::  ::::  :   :::: : :: :::::    :: ::::::::::::::::::: :::::
1085814    GCCGCATCAGGCTCTTACCGTGTTCTACGCGGCGGCAGCTGGTACGATAGCGCGAAGAACTGCACTGTAGGCTTTCGGTTTAACCGCGACCCTGGCTACGGGAACTTAGATATTGGCTTCCGCTTGGCTTGGCGGCC 
Template:  AE017226.1 strand: - 2304682-2304823 ref: 2304672-2304826
Variable:  AE017226.1 strand: - 2276639-2276780 alnlen 141 mutations 33 involve-A 24 involve-T 3

2304823    GCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCCCTTGAGC (revcomp)
           ::::: :: :::  ::::::: : ::::::::::::::: :::::  :: ::   :::::: :::::::   :::   : :  :::::::: : ::::: :: ::  ::::::::::::: ::::::::: ::: : ::::
2276780    GCGTCGGGGTCTGCCCGTGTTGATCGCGGCGGCAGCTGGGACAACGGCGTGAGGTACTGCAGTGTAGGCTTTCGGTTCAGCTGCAGTCCTGGCCACAGGTACTACGGTCTTGGCTTCCGCCTGGCTTGTCTGCCATAGAGC (revcomp)
Template:  AE017226.1 strand: - 2304675-2304791 ref: 2304672-2304826
Variable:  AE017226.1 strand: + 1001594-1001710 alnlen 116 mutations 29 involve-A 20 involve-T 3
(on different strand)
2304791    CAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCCCTTGAGCTCACACA (revcomp)
           :::::::  :  : ::  :::: ::::::::::::::   :::    ::  :::::::: :: : :: :::::: : ::::::::::  ::::::: :: :::::::: :::: ::
1001594    CAGCTGGTGCGGCGACAGGAACGACTGCACTGTAGGCTTTCGGGGCGACTGCAGTCCTGGCAGCGGGTACAACAGTGTTGGCTTCCGGCTGGCTTGGCG-CCCTTGAGTTCACGCA 
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