Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  AE017226.1 strand: - 2304689-2304826 ref: 2304672-2304826

Variable:  AE017226.1 strand: - 2541064-2541201 alnlen 137 mutations 23 involve-A 19 involve-T 2

GCCGCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCC (Template)
GCCGCGTCAGGCTCTAACCGTGTTTTACGCGGCGGCAGCTGGGACAACTACGCGGAGGGCTGCACTGTGGGCACCCGGGGTAACGGCAACCCTGGCAACAGGGGCAACCTTCTTGGCTTCCGCTTGGCTTGCCGGCC (Variable)
Template:  AE017226.1 strand: - 2304682-2304826 ref: 2304672-2304826

Variable:  AE017226.1 strand: - 2125634-2125778 alnlen 144 mutations 26 involve-A 21 involve-T 3

GCCGCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCCCTTGAGC (Template)
GCCGCGTCGGGCTCTGCCCGTGTTGAACGCGGCGGCAGCTGGCTCAACTACGCGTACGGCTGCACTGTAGGCGTACGGTACTGCGTCACTCCTGGCAGCAGGAGCGACAATCTTGGCTTCCGCCTGGCTTGTCGGCCATAGAGC (Variable)
Template:  AE017226.1 strand: - 2304679-2304826 ref: 2304672-2304826

Variable:  AE017226.1 strand: + 604653-604800 alnlen 147 mutations 27 involve-A 19 involve-T 6

GCCGCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCCCTTGAGCTCA (Template)
GCCGCGTCAGGCCCTTACCGCGTCAGGCGCGGCGGCAGTTGGGGCGGCAGCGCGGGCGGCTGCACTGTAGGCAGACGGGAGGACTACAGTCCTGACAGCAGGTACAACTATCTTGGCTTCCGCCTGGCTTGGCG-CCCTTGAGCTCA (Variable)
Template:  AE017226.1 strand: - 2304689-2304825 ref: 2304672-2304826

Variable:  AE017226.1 strand: - 2305023-2305159 alnlen 136 mutations 26 involve-A 23 involve-T 3

CCGCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCC (Template)
CCGCGTCAGGCTCTGGCCGTGTTTTACGCGGCGGCAGCTGGGCCGGCAGCGCGGACTACTGCGCTGTAGGCGAACGGGTCAACATCAGTCCTGGCGTCAGGTGCAGCGATCTTGGCTTCCGCCTGGCTTGCCGGCC (Variable)
Template:  AE017226.1 strand: - 2304675-2304823 ref: 2304672-2304826

Variable:  AE017226.1 strand: + 968242-968390 alnlen 148 mutations 30 involve-A 22 involve-T 4

GCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCCCTTGAGCTCACACA (Template)
GCGTCGGGTTCTTACCGCGTCCTACGCGGCGGCAGTTGGTACTTCTACGCGCACTACTGCACTGTAGGCGTACGGGGCTACTACAGTCCTGACTACTGGAGCTTCTATCTTGGCTTCCGCTTGGCTTGCCGGCC-TTGAGTTCACACA (Variable)
Template:  AE017226.1 strand: - 2304689-2304826 ref: 2304672-2304826

Variable:  AE017226.1 strand: + 1085814-1085951 alnlen 137 mutations 28 involve-A 20 involve-T 2

GCCGCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCC (Template)
GCCGCATCAGGCTCTTACCGTGTTCTACGCGGCGGCAGCTGGTACGATAGCGCGAAGAACTGCACTGTAGGCTTTCGGTTTAACCGCGACCCTGGCTACGGGAACTTAGATATTGGCTTCCGCTTGGCTTGGCGGCC (Variable)
Template:  AE017226.1 strand: - 2304682-2304823 ref: 2304672-2304826

Variable:  AE017226.1 strand: - 2276639-2276780 alnlen 141 mutations 33 involve-A 24 involve-T 3

GCGTCAGGCTCTAACCGTGTTAAACGCGGCGGCAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCCCTTGAGC (Template)
GCGTCGGGGTCTGCCCGTGTTGATCGCGGCGGCAGCTGGGACAACGGCGTGAGGTACTGCAGTGTAGGCTTTCGGTTCAGCTGCAGTCCTGGCCACAGGTACTACGGTCTTGGCTTCCGCCTGGCTTGTCTGCCATAGAGC (Variable)
Template:  AE017226.1 strand: - 2304675-2304791 ref: 2304672-2304826

Variable:  AE017226.1 strand: + 1001594-1001710 alnlen 116 mutations 29 involve-A 20 involve-T 3

CAGCTGGAACAACAACGCGAACAACTGCACTGTAGGCAAACGGAATAACAACAGTCCTGACAACAGGAACAACAATCTTGGCTTCCGCTTGGCTTGTCGGCCCTTGAGCTCACACA (Template)
CAGCTGGTGCGGCGACAGGAACGACTGCACTGTAGGCTTTCGGGGCGACTGCAGTCCTGGCAGCGGGTACAACAGTGTTGGCTTCCGGCTGGCTTGGCG-CCCTTGAGTTCACGCA (Variable)