myRT

myRT report for GCA_000005825.2_ASM582v2

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Seq: CP001879.1 Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence (285222 bp)
Overview 1 RT 1: 46922-54610 bp 2 RT 2: 130317-144129 bp 3 RT 3: 168516-172750 bp Neighborhood of RT #1 [46922, 54621] DUF4372 DDE_Tnp_1 COG4892 RVT-GII HNHc RVT-GII GIIM RVT-GII GrpB recomb_XerD Neighborhood of RT #2 [130317, 144224] HepA RVT-GII GIIM HNHc beta_clamp PRK08058 PRK05563 RVT-GII HNHc PRK05563 PRTRC_ThiF PRTRC_ThiF Neighborhood of RT #3 [168516, 173178] PRK06751 DUF3854 RVT-GII McrA dnaG Feature: gene Location: 46922-48121 bp Feature: domain Description: DUF4372 Location: 46937-47081 bp Feature: domain Description: DUF4372 Location: 46937-47081 bp Feature: domain Description: DDE_Tnp_1 Location: 47249-47876 bp Feature: domain Description: DDE_Tnp_1 Location: 47249-47876 bp Feature: gene Location: 48463-48852 bp Feature: domain Description: COG4892 Location: 48631-48847 bp Feature: domain Description: COG4892 Location: 48631 -48847 bp Feature: gene Location: 49156-50070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49159-49246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491 59-49246 bp Feature: domain Description: HNHc Note: nucleases Location: 49801-49939 bp Feature: domain Description: HNHc Note: nucleases Location: 49801 -49939 bp Feature: gene Location: 50210-51454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50414-51068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5041 4-51 068 bp Feature: domain Description: GIIM Note: maturase Location: 51149-51368 bp Feature: domain Description: GIIM Note: maturase Location: 51 1 49-51 368 bp Feature: gene Location: 51962-52810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52220-52772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52220-52772 bp Feature: gene Location: 53558-53968 bp Feature: domain Description: GrpB Location: 53573-53930 bp Feature: domain Description: GrpB Location: 53573-53930 bp Feature: gene Location: 54406-54621 bp Feature: domain Description: recomb_XerD Location: 54415-54610 bp Feature: domain Description: recomb_XerD Location: 5441 5-5461 0 bp Feature: gene Location: 130317-131225 bp Feature: gene Location: 131243-132895 bp Feature: domain Description: HepA Location: 131660-132764 bp Feature: domain Description: HepA Location: 1 31 660-1 32764 bp Feature: gene Location: 133135-135069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133435-134146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 33435-1 341 46 bp Feature: domain Description: GIIM Note: maturase Location: 134236-134455 bp Feature: domain Description: GIIM Note: maturase Location: 1 34236-1 34455 bp Feature: domain Description: HNHc Note: nucleases Location: 134803-134959 bp Feature: domain Description: HNHc Note: nucleases Location: 1 34803-1 34959 bp Feature: gene Location: 135805-136338 bp Feature: gene Location: 136392-137498 bp Feature: domain Description: beta_clamp Location: 136506-137490 bp Feature: domain Description: beta_clamp Location: 1 36506-1 37490 bp Feature: gene Location: 137723-138676 bp Feature: domain Description: PRK08058 Location: 137732-138671 bp Feature: domain Description: PRK08058 Location: 1 37732-1 38671 bp Feature: gene Location: 138715-139926 bp Feature: domain Description: PRK05563 Location: 138718-139909 bp Feature: domain Description: PRK05563 Location: 1 3871 8-1 39909 bp Feature: gene Location: 140247-142043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140544-141246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 40544-1 41 246 bp Feature: domain Description: HNHc Note: nucleases Location: 141792-141927 bp Feature: domain Description: HNHc Note: nucleases Location: 1 41 792-1 41 927 bp Feature: gene Location: 142787-143203 bp Feature: domain Description: PRK05563 Location: 142790-143174 bp Feature: domain Description: PRK05563 Location: 1 42790-1 431 74 bp Feature: gene Location: 143349-144224 bp Feature: domain Description: PRTRC_ThiF Location: 143385-143808 bp Feature: domain Description: PRTRC_ThiF Location: 1 43385-1 43808 bp Feature: domain Description: PRTRC_ThiF Location: 143895-144129 bp Feature: domain Description: PRTRC_ThiF Location: 1 43895-1 441 29 bp Feature: gene Location: 168516-168971 bp Feature: domain Description: PRK06751 Location: 168519-168843 bp Feature: domain Description: PRK06751 Location: 1 6851 9-1 68843 bp Feature: gene Location: 169017-169304 bp Feature: domain Description: DUF3854 Location: 169041-169224 bp Feature: domain Description: DUF3854 Location: 1 69041 -1 69224 bp Feature: gene Location: 169517-171391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169835-170540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 69835-1 70540 bp Feature: domain Description: McrA Location: 171143-171329 bp Feature: domain Description: McrA Location: 1 71 1 43-1 71 329 bp Feature: gene Location: 171787-171972 bp Feature: gene Location: 172126-173178 bp Feature: domain Description: dnaG Location: 172162-172750 bp Feature: domain Description: dnaG Location: 1 721 62-1 72750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609), COG4892 (Predicted heme/steroid binding protein ), RVT-GII, HNHc (smart00507), GIIM (pfam08388), GrpB (pfam04229), recomb_XerD (TIGR02225), HepA (COG0553), beta_clamp (cl29549)
PRK08058 (DNA polymerase III subunit delta'; Validated), PRK05563 (DNA polymerase III subunits gamma and tau; Validated), PRTRC_ThiF (TIGR03736), PRK06751 (single-stranded DNA-binding protein; Provisional), DUF3854 (pfam12965), McrA (COG4058), dnaG (TIGR01391)