myRT

myRT report for GCA_000006925.2_ASM692v2

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Seq: AF386526.1 Shigella flexneri 2a str. 301 virulence plasmid pCP301, complete sequence (221618 bp)
Overview 1 RT 1: 29339-31811 bp 2 RT 2: 144804-147212 bp 3 RT 3: 156758-159816 bp Neighborhood of RT #1 [29339, 31811] COG3547 RVT-GII GIIM Paired_CXXCH_1 Neighborhood of RT #2 [144804, 147409] Y2_Tnp RVT-GII PHA02517 PHA02517 Neighborhood of RT #3 [156758, 159836] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 29339-29521 bp Feature: gene Location: 29516-29875 bp Ori: AAL72536.2 Feature: domain Description: COG3547 Location: 29531-29861 bp Feature: domain Description: COG3547 Location: 29531 -29861 bp Feature: gene Location: 30161-31381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30347-31001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30347-31 001 bp Feature: domain Description: GIIM Note: maturase Location: 31079-31301 bp Feature: domain Description: GIIM Note: maturase Location: 31 079-31 301 bp Feature: gene Location: 31156-31551 bp Ori: AAL72537.1 Feature: domain Description: Paired_CXXCH_1 Location: 31171-31273 bp Feature: domain Description: Paired_CXXCH_1 Location: 31 1 71 -31 273 bp Feature: gene Location: 31392-31811 bp Feature: gene Location: 144804-145160 bp Ori: AAL72470.1 Feature: domain Description: Y2_Tnp Location: 144855-145032 bp Feature: domain Description: Y2_Tnp Location: 1 44855-1 45032 bp Feature: gene Location: 145160-145582 bp Feature: gene Location: 146245-146484 bp Ori: AAL72546.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146251-146458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 46251 -1 46458 bp Feature: gene Location: 146631-146873 bp Ori: AAL72512.1 Feature: domain Description: PHA02517 Location: 146667-146829 bp Feature: domain Description: PHA0251 7 Location: 1 46667-1 46829 bp Feature: gene Location: 146846-147409 bp Ori: AAL72415.1 Feature: domain Description: PHA02517 Location: 146906-147212 bp Feature: domain Description: PHA0251 7 Location: 1 46906-1 4721 2 bp Feature: gene Location: 156758-156943 bp Feature: gene Location: 157296-157622 bp Ori: AAL72379.1 Feature: domain Description: GIIM Note: maturase Location: 157329-157548 bp Feature: domain Description: GIIM Note: maturase Location: 1 57329-1 57548 bp Feature: gene Location: 157675-158478 bp Ori: AAL72514.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157975-158470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 57975-1 58470 bp Feature: gene Location: 158491-158691 bp Ori: AAL72515.1 Feature: domain Description: Tra5 Location: 158500-158674 bp Feature: domain Description: Tra5 Location: 1 58500-1 58674 bp Feature: gene Location: 159087-159836 bp Ori: AAL72311.1 Gene: phoN1 Feature: domain Description: PAP2_acid_phosphatase Location: 159162-159816 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 591 62-1 5981 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), Paired_CXXCH_1 (pfam09699), Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: AE005674.2 Shigella flexneri 2a str. 301, complete genome (4607202 bp)
Overview 1 RT 1: 3069744-3074771 bp Neighborhood of RT #1 [3069744, 3074771] PHA02517 RVT-GII GIIM Feature: gene Location: 3069744-3070277 bp Feature: gene Location: 3072020-3072406 bp Ori: AAN44455.1 Feature: domain Description: PHA02517 Location: 3072023-3072404 bp Feature: domain Description: PHA02 517 Location: 3072 02 3-3072 404 bp Feature: gene Location: 3072583-3074091 bp Ori: AAN44456.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3072841-3073573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3072 841-3073573 bp Feature: domain Description: GIIM Note: maturase Location: 3073648-3073846 bp Feature: domain Description: GIIM Note: maturase Location: 3073648-3073846 bp Feature: gene Location: 3074060-3074485 bp Feature: gene Location: 3074520-3074771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)