myRT

myRT report for GCA_000007065.1_ASM706v1

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Seq: AE008384.1 Methanosarcina mazei strain Goe1, complete genome (4096345 bp)
Overview 1 RT 1: 3205365-3210177 bp 2 RT 2: 3218252-3225282 bp 3 RT 3: 4086669-4090970 bp Neighborhood of RT #1 [3205365, 3210203] DUF2683 COG4584 RVT_N RVT-GII GIIM DnaC DnaC Neighborhood of RT #2 [3218252, 3225332] COG1244 COG4584 RVT_N RVT-GII InsB InsA RVT-GII GIIM COG4584 DnaC Neighborhood of RT #3 [4086669, 4090970] Cmr1_III-B Cas6b_N Cas6b_C RVT-CRISPR GIIM Feature: gene Location: 3205365-3205646 bp Ori: AAM32377.1 Feature: domain Description: DUF2683 Location: 3205380-3205593 bp Feature: domain Description: DUF2683 Location: 3205380-3205593 bp Feature: gene Location: 3206043-3206732 bp Ori: AAM32378.1 Feature: domain Description: COG4584 Location: 3206046-3206613 bp Feature: domain Description: COG4584 Location: 3206046-320661 3 bp Feature: gene Location: 3207154-3208653 bp Ori: AAM32379.1 Feature: domain Description: RVT_N Location: 3207223-3207466 bp Feature: domain Description: RVT_N Location: 3207223-3207466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3207511-3208168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320751 1 -32081 68 bp Feature: domain Description: GIIM Note: maturase Location: 3208222-3208453 bp Feature: domain Description: GIIM Note: maturase Location: 3208222-3208453 bp Feature: gene Location: 3209431-3209619 bp Ori: AAM32380.1 Feature: domain Description: DnaC Location: 3209434-3209596 bp Feature: domain Description: DnaC Location: 3209434-3209596 bp Feature: gene Location: 3209616-3210203 bp Ori: AAM32381.1 Feature: domain Description: DnaC Location: 3209619-3210177 bp Feature: domain Description: DnaC Location: 320961 9-321 01 77 bp Feature: gene Location: 3218252-3219307 bp Ori: AAM32389.1 Feature: domain Description: COG1244 Location: 3218345-3219269 bp Feature: domain Description: COG1 244 Location: 321 8345-321 9269 bp Feature: gene Location: 3220398-3221087 bp Ori: AAM32390.1 Feature: domain Description: COG4584 Location: 3220401-3220968 bp Feature: domain Description: COG4584 Location: 3220401 -3220968 bp Feature: gene Location: 3221510-3222121 bp Ori: AAM32391.1 Feature: domain Description: RVT_N Location: 3221579-3221822 bp Feature: domain Description: RVT_N Location: 3221 579-3221 822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221867-3222119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221 867-32221 1 9 bp Feature: gene Location: 3222199-3222423 bp Ori: AAM32392.1 Feature: domain Description: InsB Location: 3222202-3222388 bp Feature: domain Description: InsB Location: 3222202-3222388 bp Feature: gene Location: 3222462-3222881 bp Ori: AAM32393.1 Feature: domain Description: InsA Location: 3222465-3222750 bp Feature: domain Description: InsA Location: 3222465-3222750 bp Feature: gene Location: 3223005-3223757 bp Ori: AAM32394.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3223008-3223272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3223008-3223272 bp Feature: domain Description: GIIM Note: maturase Location: 3223326-3223557 bp Feature: domain Description: GIIM Note: maturase Location: 3223326-3223557 bp Feature: gene Location: 3223789-3224538 bp Ori: AAM32395.1 Feature: domain Description: COG4584 Location: 3223858-3224140 bp Feature: domain Description: COG4584 Location: 3223858-32241 40 bp Feature: gene Location: 3224535-3225332 bp Ori: AAM32396.1 Feature: domain Description: DnaC Location: 3224538-3225282 bp Feature: domain Description: DnaC Location: 3224538-3225282 bp Feature: gene Location: 4086669-4087769 bp Ori: AAM33054.1 Feature: domain Description: Cmr1_III-B Location: 4086684-4087221 bp Feature: domain Description: Cmr1 _III-B Location: 4086684-4087221 bp Feature: gene Location: 4087807-4088520 bp Ori: AAM33055.1 Feature: domain Description: Cas6b_N Location: 4087828-4088128 bp Feature: domain Description: Cas6b_N Location: 4087828-40881 28 bp Feature: domain Description: Cas6b_C Location: 4088140-4088473 bp Feature: domain Description: Cas6b_C Location: 40881 40-4088473 bp Feature: gene Location: 4088643-4089089 bp Ori: AAM33056.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4088646-4088763 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4088646-4088763 bp Feature: domain Description: GIIM Note: maturase Location: 4088925-4089084 bp Feature: domain Description: GIIM Note: maturase Location: 4088925-4089084 bp Feature: gene Location: 4089787-4090137 bp Feature: gene Location: 4090734-4090970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2683 (pfam10884), COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DnaC (COG1484), COG1244 (Uncharacterized Fe-S cluster-containing protein), InsB (COG1662), InsA (COG3677), Cmr1_III-B (cd09657)
Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR