myRT

myRT report for GCA_000007565.2_ASM756v2

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Seq: AE015451.2 Pseudomonas putida KT2440 complete genome (6181873 bp)
Overview 1 RT 1: 739418-746472 bp 2 RT 2: 1424599-1432944 bp 3 RT 3: 1817859-1825242 bp 4 RT 4: 2067342-2073988 bp 5 RT 5: 3591953-3598037 bp 6 RT 6: 4344425-4351085 bp 7 RT 7: 4390870-4395121 bp 8 RT 8: 5038455-5042934 bp Neighborhood of RT #1 [739418, 746498] PulF N_methyl Pilin RVT-GII GIIM CSP_CDS LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [1424599, 1433012] RhtB DUF4223 RVT-GII GIIM PRK05257 RVT-GII GIIM HTH_20 OYE_YqiM_FMN Neighborhood of RT #3 [1817859, 1825253] nlpD EnvC PRK05657 RVT-GII GIIM PreA DUF3470 mutS1 Neighborhood of RT #4 [2067342, 2073988] KOG2848 PRK06213 RVT-GII GIIM TonB-siderophor Neighborhood of RT #5 [3591953, 3598111] LysR oxido_grp_1 RVT-GII GIIM PRK10605 Tas Neighborhood of RT #6 [4344425, 4351099] PBP2_phosphate_like_1 OmpA_C-like PRK06116 RVT-GII GIIM galU CytC Neighborhood of RT #7 [4390870, 4395174] Phage_TAC_7 Tail_tube RVT-GII GIIM COG4386 DUF2635 Neighborhood of RT #8 [5038455, 5042934] InsE PHA02517 RVT-GII HTH_3 HTH_3 Feature: gene Location: 739418-740626 bp Ori: AAN66258.1 Gene: pilC Feature: domain Description: PulF Location: 739439-740624 bp Feature: domain Description: PulF Location: 739439-740624 bp Feature: gene Location: 740843-741253 bp Ori: AAN66259.1 Gene: pilA Feature: domain Description: N_methyl Location: 740846-740924 bp Feature: domain Description: N_methyl Location: 740846-740924 bp Feature: domain Description: Pilin Location: 740948-741245 bp Feature: domain Description: Pilin Location: 740948-741 245 bp Feature: gene Location: 741900-743321 bp Ori: AAN66260.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742257-742872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742257-742872 bp Feature: domain Description: GIIM Note: maturase Location: 742926-743154 bp Feature: domain Description: GIIM Note: maturase Location: 742926-7431 54 bp Feature: gene Location: 743595-744335 bp Ori: AAN66261.1 Feature: domain Description: CSP_CDS Location: 743634-743808 bp Feature: domain Description: CSP_CDS Location: 743634-743808 bp Feature: gene Location: 744966-746498 bp Ori: AAN66262.1 Feature: domain Description: LZ_Tnp_IS66 Location: 745074-745284 bp Feature: domain Description: LZ_Tnp_IS66 Location: 745074-745284 bp Feature: domain Description: zf-IS66 Location: 745314-745437 bp Feature: domain Description: zf-IS66 Location: 74531 4-745437 bp Feature: domain Description: DDE_Tnp_IS66 Location: 745482-746337 bp Feature: domain Description: DDE_Tnp_IS66 Location: 745482-746337 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 746358-746472 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 746358-746472 bp Feature: gene Location: 1424599-1425366 bp Ori: AAN66872.1 Feature: domain Description: RhtB Location: 1424761-1425358 bp Feature: domain Description: RhtB Location: 1 424761 -1 425358 bp Feature: gene Location: 1425407-1425598 bp Ori: AAN66873.1 Feature: domain Description: DUF4223 Location: 1425410-1425578 bp Feature: domain Description: DUF4223 Location: 1 42541 0-1 425578 bp Feature: gene Location: 1426103-1427524 bp Ori: AAN66874.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1426460-1427075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 426460-1 427075 bp Feature: domain Description: GIIM Note: maturase Location: 1427129-1427357 bp Feature: domain Description: GIIM Note: maturase Location: 1 4271 29-1 427357 bp Feature: gene Location: 1427900-1429483 bp Ori: AAN66875.1 Gene: mqo-II Feature: domain Description: PRK05257 Location: 1427921-1429391 bp Feature: domain Description: PRK05257 Location: 1 427921 -1 429391 bp Feature: gene Location: 1429963-1431384 bp Ori: AAN66876.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1430320-1430935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 430320-1 430935 bp Feature: domain Description: GIIM Note: maturase Location: 1430989-1431217 bp Feature: domain Description: GIIM Note: maturase Location: 1 430989-1 431 21 7 bp Feature: gene Location: 1431536-1431871 bp Ori: AAN66877.1 Feature: domain Description: HTH_20 Location: 1431620-1431788 bp Feature: domain Description: HTH_20 Location: 1 431 620-1 431 788 bp Feature: gene Location: 1431921-1433012 bp Ori: AAN66878.1 Gene: xenA Feature: domain Description: OYE_YqiM_FMN Location: 1431933-1432944 bp Feature: domain Description: OYE_YqiM_FMN Location: 1 431 933-1 432944 bp Feature: gene Location: 1817859-1818647 bp Ori: AAN67243.1 Feature: domain Description: nlpD Location: 1817913-1818183 bp Feature: domain Description: nlpD Location: 1 81 791 3-1 81 81 83 bp Feature: domain Description: EnvC Location: 1818228-1818636 bp Feature: domain Description: EnvC Location: 1 81 8228-1 81 8636 bp Feature: gene Location: 1818756-1819763 bp Ori: AAN67244.1 Gene: rpoS Feature: domain Description: PRK05657 Location: 1818816-1819758 bp Feature: domain Description: PRK05657 Location: 1 81 881 6-1 81 9758 bp Feature: gene Location: 1820238-1821659 bp Ori: AAN67245.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1820595-1821210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 820595-1 821 21 0 bp Feature: domain Description: GIIM Note: maturase Location: 1821264-1821492 bp Feature: domain Description: GIIM Note: maturase Location: 1 821 264-1 821 492 bp Feature: gene Location: 1822216-1822539 bp Ori: AAN67246.1 Gene: fdxA Feature: domain Description: PreA Location: 1822228-1822402 bp Feature: domain Description: PreA Location: 1 822228-1 822402 bp Feature: domain Description: DUF3470 Location: 1822414-1822537 bp Feature: domain Description: DUF3470 Location: 1 82241 4-1 822537 bp Feature: gene Location: 1822680-1825253 bp Ori: AAN67247.1 Gene: mutS Feature: domain Description: mutS1 Location: 1822701-1825242 bp Feature: domain Description: mutS1 Location: 1 822701 -1 825242 bp Feature: gene Location: 2067342-2068055 bp Ori: AAN67463.1 Gene: plsC Feature: domain Description: KOG2848 Location: 2067360-2068047 bp Feature: domain Description: KOG2848 Location: 2067360-2068047 bp Feature: gene Location: 2068176-2068865 bp Ori: AAN67464.1 Feature: domain Description: PRK06213 Location: 2068179-2068860 bp Feature: domain Description: PRK0621 3 Location: 20681 79-2068860 bp Feature: gene Location: 2069627-2071048 bp Ori: AAN67465.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2069984-2070599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2069984-2070599 bp Feature: domain Description: GIIM Note: maturase Location: 2070653-2070881 bp Feature: domain Description: GIIM Note: maturase Location: 2070653-2070881 bp Feature: gene Location: 2071275-2073407 bp Ori: AAN67466.2 Feature: domain Description: TonB-siderophor Location: 2071464-2073405 bp Feature: domain Description: TonB-siderophor Location: 2071 464-2073405 bp Feature: gene Location: 2073608-2073988 bp Feature: gene Location: 3591953-3592864 bp Ori: AAN68778.1 Feature: domain Description: LysR Location: 3591977-3592838 bp Feature: domain Description: LysR Location: 3591 977-3592838 bp Feature: gene Location: 3592965-3593945 bp Ori: AAN68779.1 Feature: domain Description: oxido_grp_1 Location: 3592977-3593928 bp Feature: domain Description: oxido_grp_1 Location: 3592977-3593928 bp Feature: gene Location: 3594021-3595442 bp Ori: AAN68780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3594378-3594993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3594378-3594993 bp Feature: domain Description: GIIM Note: maturase Location: 3595047-3595275 bp Feature: domain Description: GIIM Note: maturase Location: 3595047-3595275 bp Feature: gene Location: 3595908-3597005 bp Ori: AAN68781.1 Gene: nemA Feature: domain Description: PRK10605 Location: 3595914-3596994 bp Feature: domain Description: PRK1 0605 Location: 359591 4-3596994 bp Feature: gene Location: 3597101-3598111 bp Ori: AAN68782.1 Feature: domain Description: Tas Location: 3597104-3598037 bp Feature: domain Description: Tas Location: 35971 04-3598037 bp Feature: gene Location: 4344425-4345732 bp Ori: AAN69412.1 Feature: domain Description: PBP2_phosphate_like_1 Location: 4344494-4345316 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 4344494-434531 6 bp Feature: domain Description: OmpA_C-like Location: 4345415-4345724 bp Feature: domain Description: OmpA_C-like Location: 434541 5-4345724 bp Feature: gene Location: 4345736-4347091 bp Ori: AAN69413.1 Gene: gor Feature: domain Description: PRK06116 Location: 4345739-4347077 bp Feature: domain Description: PRK061 1 6 Location: 4345739-4347077 bp Feature: gene Location: 4347214-4348635 bp Ori: AAN69414.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4347571-4348186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4347571 -43481 86 bp Feature: domain Description: GIIM Note: maturase Location: 4348240-4348468 bp Feature: domain Description: GIIM Note: maturase Location: 4348240-4348468 bp Feature: gene Location: 4349109-4349948 bp Ori: AAN69415.1 Gene: galU Feature: domain Description: galU Location: 4349118-4349901 bp Feature: domain Description: galU Location: 43491 1 8-4349901 bp Feature: gene Location: 4350185-4351099 bp Ori: AAN69416.1 Feature: domain Description: CytC Location: 4350248-4351085 bp Feature: domain Description: CytC Location: 4350248-4351 085 bp Feature: gene Location: 4390870-4391166 bp Ori: AAN69460.2 Feature: domain Description: Phage_TAC_7 Location: 4390885-4391134 bp Feature: domain Description: Phage_TAC_7 Location: 4390885-4391 1 34 bp Feature: gene Location: 4391163-4391516 bp Ori: AAN69461.1 Feature: domain Description: Tail_tube Location: 4391178-4391508 bp Feature: domain Description: Tail_tube Location: 4391 1 78-4391 508 bp Feature: gene Location: 4391593-4393014 bp Ori: AAN69462.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4391950-4392565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4391 950-4392565 bp Feature: domain Description: GIIM Note: maturase Location: 4392619-4392847 bp Feature: domain Description: GIIM Note: maturase Location: 439261 9-4392847 bp Feature: gene Location: 4393484-4394971 bp Ori: AAN69463.1 Feature: domain Description: COG4386 Location: 4393487-4394945 bp Feature: domain Description: COG4386 Location: 4393487-4394945 bp Feature: gene Location: 4394971-4395174 bp Ori: AAN69464.1 Feature: domain Description: DUF2635 Location: 4394989-4395121 bp Feature: domain Description: DUF2635 Location: 4394989-43951 21 bp Feature: gene Location: 5038455-5038709 bp Ori: AAN70019.1 Feature: domain Description: InsE Location: 5038470-5038701 bp Feature: domain Description: InsE Location: 5038470-5038701 bp Feature: gene Location: 5038700-5039458 bp Ori: AAN70020.1 Feature: domain Description: PHA02517 Location: 5038772-5039318 bp Feature: domain Description: PHA0251 7 Location: 5038772-503931 8 bp Feature: gene Location: 5039382-5040503 bp Ori: AAN70021.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5039421-5040111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5039421 -50401 1 1 bp Feature: gene Location: 5040624-5041022 bp Ori: AMM03015.1 Feature: domain Description: HTH_3 Location: 5040663-5040750 bp Feature: domain Description: HTH_3 Location: 5040663-5040750 bp Feature: domain Description: HTH_3 Location: 5040942-5041014 bp Feature: domain Description: HTH_3 Location: 5040942-5041 01 4 bp Feature: gene Location: 5041684-5042934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PulF (COG1459), N_methyl (pfam07963), Pilin (pfam00114), RVT-GII, GIIM (pfam08388), CSP_CDS (cd04458), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)
RhtB (COG1280), DUF4223 (pfam13978), PRK05257 (malate:quinone oxidoreductase; Validated), HTH_20 (pfam12840), OYE_YqiM_FMN (cd02932), nlpD (PRK10871), EnvC (COG4942), PRK05657 (RNA polymerase sigma factor RpoS; Validated), PreA (COG1146), DUF3470 (pfam11953)
mutS1 (TIGR01070), KOG2848 (KOG2848, 1-acyl-sn-glycerol-3-phosphate acyltransferase ), PRK06213 (crotonase/enoyl-CoA hydratase family protein), TonB-siderophor (TIGR01783), LysR (COG0583), oxido_grp_1 (TIGR03558), PRK10605 (N-ethylmaleimide reductase; Provisional), Tas (COG0667), PBP2_phosphate_like_1 (cd13653), OmpA_C-like (cl30079)
PRK06116 (glutathione reductase; Validated), galU (TIGR01099), CytC (COG3258), Phage_TAC_7 (pfam10109), Tail_tube (pfam10618), COG4386 (Mu-like prophage tail sheath protein gpL ), DUF2635 (pfam10948), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_3 (pfam01381)