myRT

myRT report for GCA_000007805.1_ASM780v1

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Seq: AE016853.1 Pseudomonas syringae pv. tomato str. DC3000, complete genome (6397126 bp)
Overview 1 RT 1: 2377145-2386734 bp 2 RT 2: 3758993-3765240 bp 3 RT 3: 4441402-4446031 bp Neighborhood of RT #1 [2377145, 2386772] PRK09257 PRK05298 RVT-GII GIIM gltX COG3547 Neighborhood of RT #2 [3758993, 3765278] COG3547 RVT-GII GIIM solA type_I_sec_TolC Neighborhood of RT #3 [4441402, 4446045] HTH_XRE CSP_CDS RVT-Retrons DUF2514 Feature: gene Location: 2377145-2378341 bp Ori: AAO55680.1 Gene: aspC Feature: domain Description: PRK09257 Location: 2377154-2378339 bp Feature: domain Description: PRK09257 Location: 23771 54-2378339 bp Feature: gene Location: 2378720-2380735 bp Ori: AAO55681.1 Gene: uvrB Feature: domain Description: PRK05298 Location: 2378726-2380724 bp Feature: domain Description: PRK05298 Location: 2378726-2380724 bp Feature: gene Location: 2381162-2382529 bp Ori: AAO55682.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2381495-2382107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2381 495-23821 07 bp Feature: domain Description: GIIM Note: maturase Location: 2382167-2382395 bp Feature: domain Description: GIIM Note: maturase Location: 23821 67-2382395 bp Feature: gene Location: 2383120-2384601 bp Ori: AAO55683.1 Gene: gltX Feature: domain Description: gltX Location: 2383126-2384530 bp Feature: domain Description: gltX Location: 23831 26-2384530 bp Feature: gene Location: 2385750-2386772 bp Ori: AAO55684.1 Feature: domain Description: COG3547 Location: 2385771-2386734 bp Feature: domain Description: COG3547 Location: 2385771 -2386734 bp Feature: gene Location: 3758993-3759100 bp Feature: gene Location: 3759367-3760389 bp Ori: AAO56803.1 Feature: domain Description: COG3547 Location: 3759388-3760351 bp Feature: domain Description: COG3547 Location: 3759388-3760351 bp Feature: gene Location: 3760741-3762108 bp Ori: AAO56804.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3761074-3761686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3761 074-3761 686 bp Feature: domain Description: GIIM Note: maturase Location: 3761746-3761974 bp Feature: domain Description: GIIM Note: maturase Location: 3761 746-3761 974 bp Feature: gene Location: 3762732-3763907 bp Ori: AAO56805.1 Feature: domain Description: solA Location: 3762741-3763896 bp Feature: domain Description: solA Location: 3762741 -3763896 bp Feature: gene Location: 3763908-3765278 bp Ori: AAO56806.1 Gene: tliF Feature: domain Description: type_I_sec_TolC Location: 3763995-3765240 bp Feature: domain Description: type_I_sec_TolC Location: 3763995-3765240 bp Feature: gene Location: 4441402-4442067 bp Ori: AAO57392.1 Feature: domain Description: HTH_XRE Location: 4441441-4441567 bp Feature: domain Description: HTH_XRE Location: 4441 441 -4441 567 bp Feature: gene Location: 4442900-4443118 bp Ori: AAO57393.1 Feature: domain Description: CSP_CDS Location: 4442927-4443104 bp Feature: domain Description: CSP_CDS Location: 4442927-44431 04 bp Feature: gene Location: 4443121-4444302 bp Ori: AAO57394.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4443262-4443829 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4443262-4443829 bp Feature: gene Location: 4445395-4445538 bp Feature: gene Location: 4445527-4446045 bp Ori: AAO57396.1 Feature: domain Description: DUF2514 Location: 4445554-4446031 bp Feature: domain Description: DUF251 4 Location: 4445554-4446031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09257 (aromatic amino acid transaminase), PRK05298 (excinuclease ABC subunit UvrB), RVT-GII, GIIM (pfam08388), gltX (PRK14895), COG3547 (Transposase ), solA (PRK11259), type_I_sec_TolC (TIGR01844), HTH_XRE (smart00530), CSP_CDS (cd04458)
RVT-Retrons, DUF2514 (pfam10721)