myRT

myRT report for GCA_000007985.2_ASM798v2

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Seq: AE017180.2 Geobacter sulfurreducens PCA, complete genome (3814128 bp)
Overview 1 RT 1: 583827-589398 bp 2 RT 2: 1027074-1032654 bp 3 RT 3: 1489173-1495205 bp 4 RT 4: 2707843-2711617 bp Neighborhood of RT #1 [583827, 589398] COG4190 RVT-UG12 TIR_2 Neighborhood of RT #2 [1027074, 1032806] RAYT Bac_DnaA_C RVT-GII GIIM DUF4372 DDE_Tnp_1 Neighborhood of RT #3 [1489173, 1495249] Piwi_piwi-like_ProArk RVT-Retrons COG3440 Mrr_cat zf-C4_Topoisom Neighborhood of RT #4 [2707843, 2711619] RVT-GII GIIM PIN_RfVapC2-like VagC Feature: gene Location: 583827-584144 bp Feature: gene Location: 584146-584487 bp Ori: AAR33882.1 Feature: domain Description: COG4190 Location: 584149-584455 bp Feature: domain Description: COG41 90 Location: 5841 49-584455 bp Feature: gene Location: 584620-586158 bp Ori: AAR33883.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 584947-585412 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 584947-58541 2 bp Feature: gene Location: 586235-587656 bp Ori: AAR33884.1 Feature: domain Description: TIR_2 Location: 586274-586586 bp Feature: domain Description: TIR_2 Location: 586274-586586 bp Feature: gene Location: 589036-589398 bp Feature: gene Location: 1027074-1028054 bp Ori: AAR34281.1 Feature: domain Description: RAYT Location: 1027077-1027464 bp Feature: domain Description: RAYT Location: 1 027077-1 027464 bp Feature: domain Description: Bac_DnaA_C Location: 1027782-1027977 bp Feature: domain Description: Bac_DnaA_C Location: 1 027782-1 027977 bp Feature: gene Location: 1028149-1028583 bp Feature: gene Location: 1029180-1030484 bp Ori: AAR34282.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029420-1030035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 029420-1 030035 bp Feature: domain Description: GIIM Note: maturase Location: 1030080-1030284 bp Feature: domain Description: GIIM Note: maturase Location: 1 030080-1 030284 bp Feature: gene Location: 1031003-1031668 bp Feature: gene Location: 1031688-1032806 bp Ori: AAR34284.1 Feature: domain Description: DUF4372 Location: 1031697-1031916 bp Feature: domain Description: DUF4372 Location: 1 031 697-1 031 91 6 bp Feature: domain Description: DDE_Tnp_1 Location: 1032042-1032654 bp Feature: domain Description: DDE_Tnp_1 Location: 1 032042-1 032654 bp Feature: gene Location: 1489173-1490594 bp Ori: AAR34737.1 Feature: domain Description: Piwi_piwi-like_ProArk Location: 1489224-1490550 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 1 489224-1 490550 bp Feature: gene Location: 1490651-1491832 bp Feature: gene Location: 1491974-1493116 bp Ori: AAR34739.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1492196-1492832 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4921 96-1 492832 bp Feature: gene Location: 1493168-1494148 bp Ori: AAR34740.1 Feature: domain Description: COG3440 Location: 1493228-1494017 bp Feature: domain Description: COG3440 Location: 1 493228-1 49401 7 bp Feature: gene Location: 1494203-1495249 bp Ori: AAR34741.1 Feature: domain Description: Mrr_cat Location: 1494695-1495028 bp Feature: domain Description: Mrr_cat Location: 1 494695-1 495028 bp Feature: domain Description: zf-C4_Topoisom Location: 1495100-1495205 bp Feature: domain Description: zf-C4_Topoisom Location: 1 4951 00-1 495205 bp Feature: gene Location: 2707843-2708598 bp Feature: gene Location: 2708636-2709025 bp Feature: gene Location: 2709103-2710407 bp Ori: AAR35844.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2709343-2709958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2709343-2709958 bp Feature: domain Description: GIIM Note: maturase Location: 2710003-2710207 bp Feature: domain Description: GIIM Note: maturase Location: 271 0003-271 0207 bp Feature: gene Location: 2710991-2711392 bp Ori: AAR35845.1 Feature: domain Description: PIN_RfVapC2-like Location: 2711003-2711384 bp Feature: domain Description: PIN_RfVapC2-like Location: 271 1 003-271 1 384 bp Feature: gene Location: 2711392-2711619 bp Ori: AAR35846.1 Feature: domain Description: VagC Location: 2711398-2711617 bp Feature: domain Description: VagC Location: 271 1 398-271 1 61 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4190 (Predicted transcriptional regulator ), RVT-UG12, TIR_2 (pfam13676), RAYT (COG1943), Bac_DnaA_C (smart00760), RVT-GII, GIIM (pfam08388), DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609), Piwi_piwi-like_ProArk (cd04659)
RVT-Retrons, COG3440 (Predicted restriction endonuclease ), Mrr_cat (pfam04471), zf-C4_Topoisom (pfam01396), PIN_RfVapC2-like (cd18734), VagC (COG4456)