myRT

myRT report for GCA_000008865.2_ASM886v2

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Seq: AB011549.2 Escherichia coli O157:H7 str. Sakai plasmid pO157 DNA, complete sequence (92721 bp)
Overview 1 RT 1: 32837-39286 bp Neighborhood of RT #1 [32837, 39286] PRK13705 PRK13698 RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 32837-34003 bp Ori: BAA31790.2 Gene: sopA Feature: domain Description: PRK13705 Location: 32840-34001 bp Feature: domain Description: PRK1 3705 Location: 32840-34001 bp Feature: gene Location: 34003-34974 bp Ori: BAA31791.1 Gene: sopB Feature: domain Description: PRK13698 Location: 34006-34969 bp Feature: domain Description: PRK1 3698 Location: 34006-34969 bp Feature: gene Location: 36274-37998 bp Ori: BAA31792.1 Feature: domain Description: RVT_N Location: 36331-36568 bp Feature: domain Description: RVT_N Location: 36331 -36568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36619-37267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3661 9-37267 bp Feature: domain Description: YkfC Location: 37399-37555 bp Feature: domain Description: YkfC Location: 37399-37555 bp Feature: domain Description: HNHc Note: nucleases Location: 37783-37942 bp Feature: domain Description: HNHc Note: nucleases Location: 37783-37942 bp Feature: gene Location: 38075-38977 bp Ori: BAA31793.1 Feature: domain Description: DUF1281 Location: 38144-38672 bp Feature: domain Description: DUF1 281 Location: 381 44-38672 bp Feature: domain Description: DUF1281_C Location: 38678-38906 bp Feature: domain Description: DUF1 281 _C Location: 38678-38906 bp Feature: gene Location: 38981-39286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13705 (plasmid-partitioning protein SopA; Provisional), PRK13698 (ParB/RepB/Spo0J family plasmid partition protein), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)