myRT

myRT report for GCA_000009485.1_ASM948v1

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Seq: AM747722.1 Burkholderia cenocepacia J2315 chromosome 3, complete genome (875977 bp)
Overview 1 RT 1: 127064-132412 bp 2 RT 2: 715643-719559 bp Neighborhood of RT #1 [127064, 132435] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Neighborhood of RT #2 [715643, 719606] PRK09183 PRK09409 RVT-GII TnpB_IS66 InsE Feature: gene Location: 127064-127819 bp Ori: CAR57048.1 Feature: domain Description: his_ut_repres Location: 127142-127814 bp Feature: domain Description: his_ut_repres Location: 1 271 42-1 2781 4 bp Feature: gene Location: 128054-128626 bp Ori: CAR57049.1 Feature: domain Description: FIN Location: 128240-128591 bp Feature: domain Description: FIN Location: 1 28240-1 28591 bp Feature: gene Location: 128790-130229 bp Ori: CAR57050.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 129345-129981 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 29345-1 29981 bp Feature: gene Location: 130555-130884 bp Ori: CAR57051.1 Feature: domain Description: Histone_HNS Location: 130576-130813 bp Feature: domain Description: Histone_HNS Location: 1 30576-1 3081 3 bp Feature: gene Location: 131188-132435 bp Ori: CAR57052.1 Feature: domain Description: MFS_MucK Location: 131278-132412 bp Feature: domain Description: MFS_MucK Location: 1 31 278-1 3241 2 bp Feature: gene Location: 715643-716416 bp Ori: CAR57587.1 Feature: domain Description: PRK09183 Location: 715646-716408 bp Feature: domain Description: PRK091 83 Location: 71 5646-71 6408 bp Feature: gene Location: 716687-717574 bp Ori: CAR57588.1 Feature: domain Description: PRK09409 Location: 716690-717557 bp Feature: domain Description: PRK09409 Location: 71 6690-71 7557 bp Feature: gene Location: 717606-718537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 718014-718530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 801 4-71 8530 bp Feature: gene Location: 718897-719202 bp Feature: domain Description: TnpB_IS66 Location: 718924-719203 bp Feature: domain Description: TnpB_IS66 Location: 71 8924-71 9203 bp Feature: gene Location: 719199-719606 bp Ori: CAR57591.1 Feature: domain Description: InsE Location: 719238-719559 bp Feature: domain Description: InsE Location: 71 9238-71 9559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371), PRK09183 (transposase/IS protein; Provisional), PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, TnpB_IS66 (pfam05717), InsE (COG2963)

Seq: AM747723.1 Burkholderia cenocepacia J2315 pBCJ2315 plasmid, complete genome (92661 bp)
Overview 1 RT 1: 7365-13978 bp Neighborhood of RT #1 [7365, 13978] PolY_like COG4544 RVT-GII SRAP Feature: gene Location: 7365-8843 bp Ori: CAR57712.1 Feature: domain Description: PolY_like Location: 7383-8370 bp Feature: domain Description: PolY_like Location: 7383-8370 bp Feature: gene Location: 8764-9480 bp Ori: CAR57713.1 Feature: domain Description: COG4544 Location: 8869-9304 bp Feature: domain Description: COG4544 Location: 8869-9304 bp Feature: gene Location: 9881-11413 bp Ori: CAR57714.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10292-10982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 92 -10982 bp Feature: gene Location: 11469-12431 bp Ori: CAR57715.1 Feature: domain Description: SRAP Location: 11880-12396 bp Feature: domain Description: SRAP Location: 11880-12 396 bp Feature: gene Location: 13076-13978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII, SRAP (pfam02586)

Seq: AM747721.1 Burkholderia cenocepacia J2315 chromosome 2, complete genome (3217062 bp)
Overview 1 RT 1: 1106665-1113208 bp 2 RT 2: 1152484-1155760 bp 3 RT 3: 2784979-2794184 bp Neighborhood of RT #1 [1106665, 1113222] PRK08133 COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Neighborhood of RT #2 [1152484, 1155760] Doc RVT-GII Neighborhood of RT #3 [2784979, 2794225] MFS_SV2_like MscK RVT-GII GIIM COG3547 ALDH_F7_AASADH Feature: gene Location: 1106665-1107855 bp Ori: CAR54857.1 Gene: metZ Feature: domain Description: PRK08133 Location: 1106671-1107850 bp Feature: domain Description: PRK0813 3 Location: 1106671-1107850 bp Feature: gene Location: 1108532-1109566 bp Ori: CAR54858.1 Feature: domain Description: COG3547 Location: 1108547-1109510 bp Feature: domain Description: COG3 547 Location: 1108547-1109510 bp Feature: gene Location: 1109737-1111104 bp Ori: CAR54859.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1110070-1110685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1110070-1110685 bp Feature: domain Description: GIIM Note: maturase Location: 1110745-1110946 bp Feature: domain Description: GIIM Note: maturase Location: 1110745-1110946 bp Feature: gene Location: 1111224-1112189 bp Ori: CAR54860.1 Feature: domain Description: GDP_MD_SDR_e Location: 1111260-1112157 bp Feature: domain Description: GDP_MD_SDR_e Location: 1111260-1112157 bp Feature: gene Location: 1112176-1113222 bp Ori: CAR54861.1 Gene: gca Feature: domain Description: Gmd Location: 1112191-1113208 bp Feature: domain Description: Gmd Location: 1112191-1113 208 bp Feature: gene Location: 1152484-1152867 bp Ori: CAR54905.1 Feature: domain Description: Doc Location: 1152490-1152835 bp Feature: domain Description: Doc Location: 1152490-115283 5 bp Feature: gene Location: 1152868-1153044 bp Feature: gene Location: 1153138-1154670 bp Ori: CAR54907.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1153549-1154239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1153 549-115423 9 bp Feature: gene Location: 1155079-1155369 bp Feature: gene Location: 1155356-1155760 bp Feature: gene Location: 2784979-2786397 bp Ori: CAR56329.1 Feature: domain Description: MFS_SV2_like Location: 2785099-2786350 bp Feature: domain Description: MFS_SV2_like Location: 2785099-27863 50 bp Feature: gene Location: 2786822-2789308 bp Ori: CAR56330.1 Feature: domain Description: MscK Location: 2786891-2789267 bp Feature: domain Description: MscK Location: 2786891-2789267 bp Feature: gene Location: 2789452-2790819 bp Ori: CAR56331.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2789785-2790400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2789785-2790400 bp Feature: domain Description: GIIM Note: maturase Location: 2790460-2790661 bp Feature: domain Description: GIIM Note: maturase Location: 2790460-2790661 bp Feature: gene Location: 2790990-2792024 bp Ori: CAR56332.1 Feature: domain Description: COG3547 Location: 2791005-2791968 bp Feature: domain Description: COG3 547 Location: 2791005-2791968 bp Feature: gene Location: 2792714-2794225 bp Ori: CAR56333.1 Feature: domain Description: ALDH_F7_AASADH Location: 2792768-2794184 bp Feature: domain Description: ALDH_F7_AASADH Location: 2792768-2794184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08133 (O-succinylhomoserine sulfhydrylase; Validated), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089), Doc (COG3654), MFS_SV2_like (cd17316), MscK (COG3264), ALDH_F7_AASADH (cd07130)

Seq: AM747720.1 Burkholderia cenocepacia J2315 chromosome 1, complete genome (3870082 bp)
Overview 1 RT 1: 105813-110364 bp Neighborhood of RT #1 [105813, 110396] HipB RVT-GII D Feature: gene Location: 105813-106028 bp Feature: gene Location: 106119-106610 bp Ori: CAR50394.1 Feature: domain Description: HipB Location: 106131-106347 bp Feature: domain Description: HipB Location: 106131-10634 7 bp Feature: gene Location: 107182-108714 bp Ori: CAR50395.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107593-108283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107593-108283 bp Feature: gene Location: 108758-109138 bp Feature: gene Location: 109326-110396 bp Ori: CAR50397.1 Feature: domain Description: D Location: 109380-110364 bp Feature: domain Description: D Location: 109380-110364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-GII, D (PHA02561)