myRT

myRT report for GCA_000009705.1_ASM970v1

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Seq: AP003604.1 Nostoc sp. PCC 7120 plasmid pCC7120delta DNA, complete sequence (55414 bp)
Overview 1 RT 1: 43655-49042 bp Neighborhood of RT #1 [43655, 49050] DDE_Tnp_1_3 RVT_N RVT-GII GIIM McrA BcsQ Feature: gene Location: 43655-44074 bp Feature: gene Location: 44181-44813 bp Ori: BAB77478.1 Gene: all8559 Feature: domain Description: DDE_Tnp_1_3 Location: 44247-44664 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 44247-44664 bp Feature: gene Location: 45989-47791 bp Ori: BAB77479.1 Gene: alr8560 Feature: domain Description: RVT_N Location: 46061-46304 bp Feature: domain Description: RVT_N Location: 46061 -46304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46349-47042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46349-47042 bp Feature: domain Description: GIIM Note: maturase Location: 47144-47375 bp Feature: domain Description: GIIM Note: maturase Location: 471 44-47375 bp Feature: domain Description: McrA Location: 47420-47765 bp Feature: domain Description: McrA Location: 47420-47765 bp Feature: gene Location: 47856-48101 bp Feature: gene Location: 48307-49050 bp Ori: BAB77481.1 Gene: alr8562 Feature: domain Description: BcsQ Location: 48310-49042 bp Feature: domain Description: BcsQ Location: 4831 0-49042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_3 (pfam13612), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), BcsQ (COG1192)

Seq: BA000020.2 Nostoc sp. PCC 7120 plasmid pCC7120alpha DNA, complete genome (408101 bp)
Overview 1 RT 1: 256519-265636 bp 2 RT 2: 333500-338894 bp Neighborhood of RT #1 [256519, 265677] RVT_N RVT-GII RVT_N RVT-GII GIIM McrA RVT-GII McrA ANK ANK ANK ANK GUN4 InsG Neighborhood of RT #2 [333500, 338908] RVT_N RVT-GII McrA DUF928 CHAT CHASE2 Feature: gene Location: 256519-257286 bp Feature: gene Location: 257308-258237 bp Feature: gene Location: 258825-259229 bp Ori: BAB78324.1 Gene: alr7240 Feature: domain Description: RVT_N Location: 258861-259095 bp Feature: domain Description: RVT_N Location: 2 58861-2 59095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259152-259212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 59152 -2 592 12 bp Feature: gene Location: 259646-261334 bp Ori: BAB78325.1 Gene: alr7241 Feature: domain Description: RVT_N Location: 259796-260033 bp Feature: domain Description: RVT_N Location: 2 59796-2 60033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260093-260747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 60093-2 60747 bp Feature: domain Description: GIIM Note: maturase Location: 260804-260951 bp Feature: domain Description: GIIM Note: maturase Location: 2 60804-2 60951 bp Feature: domain Description: McrA Location: 260984-261302 bp Feature: domain Description: McrA Location: 2 60984-2 61302 bp Feature: gene Location: 261292-262620 bp Ori: BAB78326.1 Gene: alr7242 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261421-262018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6142 1-2 62 018 bp Feature: domain Description: McrA Location: 262252-262585 bp Feature: domain Description: McrA Location: 2 62 2 52 -2 62 585 bp Feature: gene Location: 263247-265067 bp Ori: BAB78327.1 Gene: alr7243 Feature: domain Description: ANK Location: 263550-263724 bp Feature: domain Description: ANK Location: 2 63550-2 6372 4 bp Feature: domain Description: ANK Location: 263748-263997 bp Feature: domain Description: ANK Location: 2 63748-2 63997 bp Feature: domain Description: ANK Location: 264030-264195 bp Feature: domain Description: ANK Location: 2 64030-2 64195 bp Feature: domain Description: ANK Location: 264204-264459 bp Feature: domain Description: ANK Location: 2 642 04-2 64459 bp Feature: domain Description: GUN4 Location: 264486-264888 bp Feature: domain Description: GUN4 Location: 2 64486-2 64888 bp Feature: gene Location: 265165-265677 bp Ori: BAB78328.1 Gene: all7244 Feature: domain Description: InsG Location: 265228-265636 bp Feature: domain Description: InsG Location: 2 652 2 8-2 65636 bp Feature: gene Location: 333500-333751 bp Feature: gene Location: 334192-334587 bp Ori: BAB78391.1 Gene: alr7307 Feature: domain Description: RVT_N Location: 334228-334468 bp Feature: domain Description: RVT_N Location: 3342 2 8-334468 bp Feature: gene Location: 334580-335419 bp Ori: BAB78392.1 Gene: alr7308 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334583-334835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334583-334835 bp Feature: domain Description: McrA Location: 335066-335390 bp Feature: domain Description: McrA Location: 335066-335390 bp Feature: gene Location: 335694-336458 bp Ori: BAB78393.1 Gene: all7309 Feature: domain Description: DUF928 Location: 335847-336447 bp Feature: domain Description: DUF92 8 Location: 335847-336447 bp Feature: gene Location: 336563-338908 bp Ori: BAB78394.1 Gene: all7310 Feature: domain Description: CHAT Location: 337175-337562 bp Feature: domain Description: CHAT Location: 337175-337562 bp Feature: domain Description: CHASE2 Location: 337691-338894 bp Feature: domain Description: CHASE2 Location: 337691-338894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), ANK (smart00248), GUN4 (pfam05419), InsG (COG3385), DUF928 (pfam06051), CHAT (pfam12770), CHASE2 (smart01080)

Seq: BA000019.2 Nostoc sp. PCC 7120 DNA, complete genome (6413771 bp)
Overview 1 RT 1: 1726385-1734309 bp 2 RT 2: 3600932-3604709 bp 3 RT 3: 4209923-4213886 bp 4 RT 4: 5984215-5989020 bp 5 RT 5: 6206030-6211578 bp Neighborhood of RT #1 [1726385, 1734309] TPR_12 TPR_12 TPR_12 TPR_10 TPR_12 TPR_7 HTH_XRE DUF4384 RVT-CRISPR cas1 Neighborhood of RT #2 [3600932, 3604816] COG4634 RVT-Retrons HTH_XRE SDR_c Neighborhood of RT #3 [4209923, 4213886] YfmG Avd_like RVT-DGRs Neighborhood of RT #4 [5984215, 5989040] hisS DUF3598 RVT-DGRs YfmG Neighborhood of RT #5 [6206030, 6211578] RVT_N RVT-GII McrA InsQ Feature: gene Location: 1726385-1727734 bp Ori: BAB77832.1 Gene: all1466 Feature: domain Description: TPR_12 Location: 1726535-1726754 bp Feature: domain Description: TPR_12 Location: 172653 5-1726754 bp Feature: domain Description: TPR_12 Location: 1726781-1727006 bp Feature: domain Description: TPR_12 Location: 1726781-1727006 bp Feature: domain Description: TPR_12 Location: 1727042-1727258 bp Feature: domain Description: TPR_12 Location: 1727042-1727258 bp Feature: domain Description: TPR_10 Location: 1727294-1727396 bp Feature: domain Description: TPR_10 Location: 1727294-17273 96 bp Feature: domain Description: TPR_12 Location: 1727432-1727636 bp Feature: domain Description: TPR_12 Location: 172743 2-172763 6 bp Feature: domain Description: TPR_7 Location: 1727675-1727729 bp Feature: domain Description: TPR_7 Location: 1727675-1727729 bp Feature: gene Location: 1728408-1729151 bp Ori: BAB77833.1 Gene: all1467 Feature: domain Description: HTH_XRE Location: 1728456-1728603 bp Feature: domain Description: HTH_XRE Location: 1728456-1728603 bp Feature: domain Description: DUF4384 Location: 1728777-1729008 bp Feature: domain Description: DUF43 84 Location: 1728777-1729008 bp Feature: gene Location: 1729649-1731655 bp Ori: BAB77834.1 Gene: alr1468 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1729835-1730444 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 172983 5-173 0444 bp Feature: domain Description: cas1 Location: 1730660-1731629 bp Feature: domain Description: cas1 Location: 173 0660-173 1629 bp Feature: gene Location: 1732539-1732745 bp Feature: gene Location: 1733488-1734309 bp Feature: gene Location: 3600932-3601225 bp Ori: BAB74658.1 Gene: asr2959 Feature: domain Description: COG4634 Location: 3600938-3601220 bp Feature: domain Description: COG463 4 Location: 3 60093 8-3 601220 bp Feature: gene Location: 3601306-3602052 bp Feature: gene Location: 3602089-3603009 bp Ori: BAB74660.1 Gene: all2961 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3602260-3602797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 602260-3 602797 bp Feature: gene Location: 3602990-3603298 bp Ori: BAB74661.1 Gene: all2962 Feature: domain Description: HTH_XRE Location: 3603002-3603164 bp Feature: domain Description: HTH_XRE Location: 3 603 002-3 603 164 bp Feature: gene Location: 3603935-3604816 bp Ori: BAB74662.1 Gene: all2963 Feature: domain Description: SDR_c Location: 3604013-3604709 bp Feature: domain Description: SDR_c Location: 3 604013 -3 604709 bp Feature: gene Location: 4209923-4210762 bp Ori: BAB75194.1 Gene: alr3495 Feature: domain Description: YfmG Location: 4209980-4210742 bp Feature: domain Description: YfmG Location: 4209980-4210742 bp Feature: gene Location: 4210972-4211316 bp Ori: BAB75195.1 Gene: alr3496 Feature: domain Description: Avd_like Location: 4210990-4211296 bp Feature: domain Description: Avd_like Location: 4210990-4211296 bp Feature: gene Location: 4211334-4212392 bp Ori: BAB75196.1 Gene: alr3497 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4211541-4212186 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4211541-4212186 bp Feature: gene Location: 4212846-4213049 bp Feature: gene Location: 4213299-4213886 bp Feature: gene Location: 5984215-5985603 bp Ori: BAB76711.1 Gene: hisS Feature: domain Description: hisS Location: 5984236-5985598 bp Feature: domain Description: hisS Location: 598423 6-5985598 bp Feature: gene Location: 5985728-5986171 bp Ori: BAB76712.1 Gene: all5013 Feature: domain Description: DUF3598 Location: 5985758-5986163 bp Feature: domain Description: DUF3 598 Location: 5985758-5986163 bp Feature: gene Location: 5986506-5987354 bp Ori: BAB76713.1 Gene: all5014 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5986512-5987139 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5986512-598713 9 bp Feature: gene Location: 5987538-5987726 bp Feature: gene Location: 5988219-5989040 bp Ori: BAB76715.1 Gene: all5016 Feature: domain Description: YfmG Location: 5988264-5989020 bp Feature: domain Description: YfmG Location: 5988264-5989020 bp Feature: gene Location: 6206030-6206362 bp Feature: gene Location: 6206589-6207287 bp Feature: gene Location: 6207390-6209009 bp Ori: BAB76905.1 Gene: all5206 Feature: domain Description: RVT_N Location: 6207465-6207708 bp Feature: domain Description: RVT_N Location: 6207465-6207708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6207762-6208416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6207762-6208416 bp Feature: domain Description: McrA Location: 6208647-6208986 bp Feature: domain Description: McrA Location: 6208647-6208986 bp Feature: gene Location: 6209607-6210848 bp Ori: BAB76906.1 Gene: all5207 Feature: domain Description: InsQ Location: 6209610-6210720 bp Feature: domain Description: InsQ Location: 6209610-6210720 bp Feature: gene Location: 6211060-6211578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), TPR_10 (pfam13374), TPR_7 (pfam13176), HTH_XRE (smart00530), DUF4384 (pfam14326), RVT-CRISPR, cas1 (TIGR00287), COG4634 (Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component ), RVT-Retrons, SDR_c (cd05233)
YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, hisS (TIGR00442), DUF3598 (pfam12204), RVT_N (pfam13655), RVT-GII, McrA (COG4058), InsQ (COG0675)