myRT

myRT report for GCA_000010005.1_ASM1000v1

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Seq: AP007281.1 Lactobacillus reuteri JCM 1112 DNA, complete genome (2039414 bp)
Overview 1 RT 1: 111610-120537 bp 2 RT 2: 263531-269658 bp 3 RT 3: 282115-287268 bp 4 RT 4: 556725-563032 bp 5 RT 5: 759432-764378 bp 6 RT 6: 1004663-1009789 bp 7 RT 7: 1030054-1036827 bp 8 RT 8: 1088145-1093806 bp 9 RT 9: 1190771-1195494 bp 10 RT 10: 1339940-1347216 bp 11 RT 11: 1437122-1447004 bp 12 RT 12: 1522360-1528234 bp Neighborhood of RT #1 [111610, 120584] SsuE COG2461 ApbE RVT-GII GIIM YSIRK_signal rib_alpha Rib Rib Neighborhood of RT #2 [263531, 269663] PRK02363 pyrG RVT-GII GIIM PRK12830 rpmE2 Neighborhood of RT #3 [282115, 287276] Glutaminase RAYT RVT-GII GIIM LTA_DltD PRK05087 Neighborhood of RT #4 [556725, 563034] oxalate_frc RAYT RVT-GII GIIM AzgA rpsD Neighborhood of RT #5 [759432, 764389] AAK_UMPK-PyrH-Ec frr RVT-GII GIIM RAYT PRK14830 Neighborhood of RT #6 [1004663, 1009791] DUF915 Acetyltransf_1 RVT-GII GIIM PRK05313 ACT_1ZPV Neighborhood of RT #7 [1030054, 1036838] Endonuclease_NS PLDc_Bfil_DEXD_like ABC_PhnC_transporter RVT-GII GIIM DUF3290 YcaP Neighborhood of RT #8 [1088145, 1093811] RVT-GII GIIM YSIRK_signal MBG MBG MBG MBG MBG MBG Gram_pos_anchor Neighborhood of RT #9 [1190771, 1195565] PRK10703 PBP1_GalR RVT-GII GIIM Ape1-like_AP-endo NTP-PPase_u3 Neighborhood of RT #10 [1339940, 1348082] Tas GT4_GtfA-like RVT-GII GIIM Mub_B2 Mub_B2 PT Gram_pos_anchor YSIRK_signal Neighborhood of RT #11 [1437122, 1447009] KxYKxGKxW COG5263 COG5263 COG5263 glucan_65_rpt Glyco_hydro_70 COG5263 Spr RVT-GII GIIM RAYT prfC Neighborhood of RT #12 [1522360, 1528320] RVT-GII GIIM nicotinamidase_related hsdR HsdR Feature: gene Location: 111610-112860 bp Ori: BAG24602.1 Feature: domain Description: SsuE Location: 111613-112138 bp Feature: domain Description: SsuE Location: 1 1 1 61 3-1 1 21 38 bp Feature: domain Description: COG2461 Location: 112198-112576 bp Feature: domain Description: COG2461 Location: 1 1 21 98-1 1 2576 bp Feature: gene Location: 112863-113789 bp Ori: BAG24603.1 Feature: domain Description: ApbE Location: 112887-113766 bp Feature: domain Description: ApbE Location: 1 1 2887-1 1 3766 bp Feature: gene Location: 114287-115669 bp Ori: BAG24604.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114605-115223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4605-1 1 5223 bp Feature: domain Description: GIIM Note: maturase Location: 115277-115505 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 5277-1 1 5505 bp Feature: gene Location: 115934-117757 bp Ori: BAG24605.1 Feature: domain Description: YSIRK_signal Location: 115970-116072 bp Feature: domain Description: YSIRK_signal Location: 1 1 5970-1 1 6072 bp Feature: gene Location: 118614-120584 bp Ori: BAG24606.1 Feature: domain Description: rib_alpha Location: 119325-119427 bp Feature: domain Description: rib_alpha Location: 1 1 9325-1 1 9427 bp Feature: domain Description: Rib Location: 119442-119700 bp Feature: domain Description: Rib Location: 1 1 9442-1 1 9700 bp Feature: domain Description: Rib Location: 120357-120537 bp Feature: domain Description: Rib Location: 1 20357-1 20537 bp Feature: gene Location: 263531-264088 bp Ori: BAG24736.1 Feature: domain Description: PRK02363 Location: 263567-264083 bp Feature: domain Description: PRK02363 Location: 263567-264083 bp Feature: gene Location: 264265-265869 bp Ori: BAG24737.1 Feature: domain Description: pyrG Location: 264268-265864 bp Feature: domain Description: pyrG Location: 264268-265864 bp Feature: gene Location: 266382-267764 bp Ori: BAG24738.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266700-267318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266700-26731 8 bp Feature: domain Description: GIIM Note: maturase Location: 267372-267600 bp Feature: domain Description: GIIM Note: maturase Location: 267372-267600 bp Feature: gene Location: 268048-269325 bp Ori: BAG24739.1 Feature: domain Description: PRK12830 Location: 268051-269299 bp Feature: domain Description: PRK1 2830 Location: 268051 -269299 bp Feature: gene Location: 269418-269663 bp Ori: BAG24740.1 Feature: domain Description: rpmE2 Location: 269421-269658 bp Feature: domain Description: rpmE2 Location: 269421 -269658 bp Feature: gene Location: 282115-283029 bp Ori: BAG24753.1 Feature: domain Description: Glutaminase Location: 282169-283021 bp Feature: domain Description: Glutaminase Location: 2821 69-283021 bp Feature: gene Location: 283175-283633 bp Ori: BAG24754.1 Feature: domain Description: RAYT Location: 283193-283574 bp Feature: domain Description: RAYT Location: 2831 93-283574 bp Feature: gene Location: 284289-285671 bp Ori: BAG24755.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284607-285222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284607-285222 bp Feature: domain Description: GIIM Note: maturase Location: 285279-285507 bp Feature: domain Description: GIIM Note: maturase Location: 285279-285507 bp Feature: gene Location: 285755-287044 bp Ori: BAG24756.1 Feature: domain Description: LTA_DltD Location: 285788-286925 bp Feature: domain Description: LTA_DltD Location: 285788-286925 bp Feature: gene Location: 287037-287276 bp Ori: BAG24757.1 Feature: domain Description: PRK05087 Location: 287040-287268 bp Feature: domain Description: PRK05087 Location: 287040-287268 bp Feature: gene Location: 556725-557579 bp Ori: BAG24998.1 Feature: domain Description: oxalate_frc Location: 556749-557565 bp Feature: domain Description: oxalate_frc Location: 556749-557565 bp Feature: gene Location: 557722-558180 bp Ori: BAG24999.1 Feature: domain Description: RAYT Location: 557740-558121 bp Feature: domain Description: RAYT Location: 557740-5581 21 bp Feature: gene Location: 559332-560714 bp Ori: BAG25000.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559650-560268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559650-560268 bp Feature: domain Description: GIIM Note: maturase Location: 560322-560550 bp Feature: domain Description: GIIM Note: maturase Location: 560322-560550 bp Feature: gene Location: 560900-562297 bp Ori: BAG25001.1 Feature: domain Description: AzgA Location: 560990-562274 bp Feature: domain Description: AzgA Location: 560990-562274 bp Feature: gene Location: 562429-563034 bp Ori: BAG25002.1 Feature: domain Description: rpsD Location: 562432-563032 bp Feature: domain Description: rpsD Location: 562432-563032 bp Feature: gene Location: 759432-760154 bp Ori: BAG25175.1 Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 759453-760146 bp Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 759453-7601 46 bp Feature: gene Location: 760159-760722 bp Ori: BAG25176.1 Feature: domain Description: frr Location: 760174-760717 bp Feature: domain Description: frr Location: 7601 74-76071 7 bp Feature: gene Location: 761218-762390 bp Ori: BAG25177.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761536-762154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761 536-7621 54 bp Feature: domain Description: GIIM Note: maturase Location: 762208-762385 bp Feature: domain Description: GIIM Note: maturase Location: 762208-762385 bp Feature: gene Location: 762850-763308 bp Ori: BAG25178.1 Feature: domain Description: RAYT Location: 762868-763249 bp Feature: domain Description: RAYT Location: 762868-763249 bp Feature: gene Location: 763610-764389 bp Ori: BAG25179.1 Feature: domain Description: PRK14830 Location: 763631-764378 bp Feature: domain Description: PRK1 4830 Location: 763631 -764378 bp Feature: gene Location: 1004663-1005508 bp Ori: BAG25399.1 Feature: domain Description: DUF915 Location: 1004762-1005506 bp Feature: domain Description: DUF91 5 Location: 1 004762-1 005506 bp Feature: gene Location: 1005647-1006192 bp Ori: BAG25400.1 Feature: domain Description: Acetyltransf_1 Location: 1005788-1006115 bp Feature: domain Description: Acetyltransf_1 Location: 1 005788-1 0061 1 5 bp Feature: gene Location: 1006280-1007662 bp Ori: BAG25401.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006598-1007216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 006598-1 00721 6 bp Feature: domain Description: GIIM Note: maturase Location: 1007270-1007498 bp Feature: domain Description: GIIM Note: maturase Location: 1 007270-1 007498 bp Feature: gene Location: 1008157-1009500 bp Ori: BAG25402.1 Feature: domain Description: PRK05313 Location: 1008160-1009498 bp Feature: domain Description: PRK0531 3 Location: 1 0081 60-1 009498 bp Feature: gene Location: 1009525-1009791 bp Ori: BAG25403.1 Feature: domain Description: ACT_1ZPV Location: 1009531-1009789 bp Feature: domain Description: ACT_1 ZPV Location: 1 009531 -1 009789 bp Feature: gene Location: 1030054-1030908 bp Ori: BAG25421.1 Feature: domain Description: Endonuclease_NS Location: 1030339-1030840 bp Feature: domain Description: Endonuclease_NS Location: 1 030339-1 030840 bp Feature: gene Location: 1031087-1033411 bp Ori: BAG25422.1 Feature: domain Description: PLDc_Bfil_DEXD_like Location: 1031156-1031582 bp Feature: domain Description: PLDc_Bfil_DEXD_like Location: 1 031 1 56-1 031 582 bp Feature: domain Description: ABC_PhnC_transporter Location: 1032389-1032470 bp Feature: domain Description: ABC_PhnC_transporter Location: 1 032389-1 032470 bp Feature: gene Location: 1033495-1034877 bp Ori: BAG25423.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1033813-1034431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 03381 3-1 034431 bp Feature: domain Description: GIIM Note: maturase Location: 1034485-1034713 bp Feature: domain Description: GIIM Note: maturase Location: 1 034485-1 03471 3 bp Feature: gene Location: 1035990-1036190 bp Ori: BAG25424.1 Feature: domain Description: DUF3290 Location: 1035993-1036179 bp Feature: domain Description: DUF3290 Location: 1 035993-1 0361 79 bp Feature: gene Location: 1036200-1036838 bp Ori: BAG25425.1 Feature: domain Description: YcaP Location: 1036206-1036827 bp Feature: domain Description: YcaP Location: 1 036206-1 036827 bp Feature: gene Location: 1088145-1089527 bp Ori: BAG25473.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1088463-1089081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 088463-1 089081 bp Feature: domain Description: GIIM Note: maturase Location: 1089135-1089363 bp Feature: domain Description: GIIM Note: maturase Location: 1 0891 35-1 089363 bp Feature: gene Location: 1090122-1093811 bp Ori: BAG25474.1 Feature: domain Description: YSIRK_signal Location: 1090194-1090266 bp Feature: domain Description: YSIRK_signal Location: 1 0901 94-1 090266 bp Feature: domain Description: MBG Location: 1091877-1092126 bp Feature: domain Description: MBG Location: 1 091 877-1 0921 26 bp Feature: domain Description: MBG Location: 1092165-1092414 bp Feature: domain Description: MBG Location: 1 0921 65-1 09241 4 bp Feature: domain Description: MBG Location: 1092453-1092702 bp Feature: domain Description: MBG Location: 1 092453-1 092702 bp Feature: domain Description: MBG Location: 1092741-1092990 bp Feature: domain Description: MBG Location: 1 092741 -1 092990 bp Feature: domain Description: MBG Location: 1093029-1093278 bp Feature: domain Description: MBG Location: 1 093029-1 093278 bp Feature: domain Description: MBG Location: 1093320-1093575 bp Feature: domain Description: MBG Location: 1 093320-1 093575 bp Feature: domain Description: Gram_pos_anchor Location: 1093689-1093806 bp Feature: domain Description: Gram_pos_anchor Location: 1 093689-1 093806 bp Feature: gene Location: 1190771-1191790 bp Ori: BAG25550.1 Feature: domain Description: PRK10703 Location: 1190774-1190912 bp Feature: domain Description: PRK1 0703 Location: 1 1 90774-1 1 9091 2 bp Feature: domain Description: PBP1_GalR Location: 1190963-1191770 bp Feature: domain Description: PBP1 _GalR Location: 1 1 90963-1 1 91 770 bp Feature: gene Location: 1191959-1192438 bp Feature: gene Location: 1192522-1193904 bp Ori: BAG25552.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1192840-1193458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 92840-1 1 93458 bp Feature: domain Description: GIIM Note: maturase Location: 1193512-1193740 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 9351 2-1 1 93740 bp Feature: gene Location: 1194400-1195227 bp Ori: BAG25553.1 Feature: domain Description: Ape1-like_AP-endo Location: 1194403-1195219 bp Feature: domain Description: Ape1 -like_AP-endo Location: 1 1 94403-1 1 9521 9 bp Feature: gene Location: 1195230-1195565 bp Ori: BAG25554.1 Feature: domain Description: NTP-PPase_u3 Location: 1195248-1195494 bp Feature: domain Description: NTP-PPase_u3 Location: 1 1 95248-1 1 95494 bp Feature: gene Location: 1339940-1340920 bp Ori: BAG25705.1 Feature: domain Description: Tas Location: 1339952-1340873 bp Feature: domain Description: Tas Location: 1 339952-1 340873 bp Feature: gene Location: 1340959-1342461 bp Ori: BAG25706.1 Feature: domain Description: GT4_GtfA-like Location: 1340968-1342429 bp Feature: domain Description: GT4_GtfA-like Location: 1 340968-1 342429 bp Feature: gene Location: 1342526-1343908 bp Ori: BAG25707.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342844-1343462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 342844-1 343462 bp Feature: domain Description: GIIM Note: maturase Location: 1343516-1343744 bp Feature: domain Description: GIIM Note: maturase Location: 1 34351 6-1 343744 bp Feature: gene Location: 1344416-1346653 bp Ori: BAG25708.1 Feature: domain Description: Mub_B2 Location: 1344566-1344785 bp Feature: domain Description: Mub_B2 Location: 1 344566-1 344785 bp Feature: domain Description: Mub_B2 Location: 1345340-1345574 bp Feature: domain Description: Mub_B2 Location: 1 345340-1 345574 bp Feature: domain Description: PT Location: 1346312-1346390 bp Feature: domain Description: PT Location: 1 34631 2-1 346390 bp Feature: domain Description: Gram_pos_anchor Location: 1346528-1346648 bp Feature: domain Description: Gram_pos_anchor Location: 1 346528-1 346648 bp Feature: gene Location: 1347096-1348082 bp Ori: BAG25709.1 Feature: domain Description: YSIRK_signal Location: 1347147-1347216 bp Feature: domain Description: YSIRK_signal Location: 1 3471 47-1 34721 6 bp Feature: gene Location: 1437122-1441588 bp Ori: BAG25784.1 Feature: domain Description: KxYKxGKxW Location: 1437134-1437197 bp Feature: domain Description: KxYKxGKxW Location: 1 4371 34-1 4371 97 bp Feature: domain Description: COG5263 Location: 1437281-1437872 bp Feature: domain Description: COG5263 Location: 1 437281 -1 437872 bp Feature: domain Description: COG5263 Location: 1437911-1438265 bp Feature: domain Description: COG5263 Location: 1 43791 1 -1 438265 bp Feature: domain Description: COG5263 Location: 1438286-1438718 bp Feature: domain Description: COG5263 Location: 1 438286-1 43871 8 bp Feature: domain Description: glucan_65_rpt Location: 1438826-1438907 bp Feature: domain Description: glucan_65_rpt Location: 1 438826-1 438907 bp Feature: domain Description: Glyco_hydro_70 Location: 1439150-1441520 bp Feature: domain Description: Glyco_hydro_70 Location: 1 4391 50-1 441 520 bp Feature: gene Location: 1441744-1442625 bp Ori: BAG25785.1 Feature: domain Description: COG5263 Location: 1441870-1442269 bp Feature: domain Description: COG5263 Location: 1 441 870-1 442269 bp Feature: domain Description: Spr Location: 1442296-1442587 bp Feature: domain Description: Spr Location: 1 442296-1 442587 bp Feature: gene Location: 1442776-1444149 bp Ori: BAG25786.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1443094-1443712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 443094-1 44371 2 bp Feature: domain Description: GIIM Note: maturase Location: 1443766-1443994 bp Feature: domain Description: GIIM Note: maturase Location: 1 443766-1 443994 bp Feature: gene Location: 1444801-1445259 bp Ori: BAG25787.1 Feature: domain Description: RAYT Location: 1444819-1445200 bp Feature: domain Description: RAYT Location: 1 44481 9-1 445200 bp Feature: gene Location: 1445432-1447009 bp Ori: BAG25788.1 Feature: domain Description: prfC Location: 1445447-1447004 bp Feature: domain Description: prfC Location: 1 445447-1 447004 bp Feature: gene Location: 1522360-1523742 bp Ori: BAG25857.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1522678-1523296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 522678-1 523296 bp Feature: domain Description: GIIM Note: maturase Location: 1523350-1523578 bp Feature: domain Description: GIIM Note: maturase Location: 1 523350-1 523578 bp Feature: gene Location: 1524265-1524759 bp Ori: BAG25858.1 Feature: domain Description: nicotinamidase_related Location: 1524280-1524718 bp Feature: domain Description: nicotinamidase_related Location: 1 524280-1 52471 8 bp Feature: gene Location: 1524985-1528320 bp Ori: BAG25859.1 Feature: domain Description: hsdR Location: 1525000-1525351 bp Feature: domain Description: hsdR Location: 1 525000-1 525351 bp Feature: domain Description: HsdR Location: 1525573-1528234 bp Feature: domain Description: HsdR Location: 1 525573-1 528234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SsuE (COG0431), COG2461 (Uncharacterized conserved protein, DUF438 domain, may contain hemerythrin domain ), ApbE (pfam02424), RVT-GII, GIIM (pfam08388), YSIRK_signal (TIGR01168), rib_alpha (TIGR02331), Rib (pfam08428), PRK02363 (DNA-directed RNA polymerase subunit delta; Reviewed), pyrG (PRK05380)
PRK12830 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed), rpmE2 (PRK01678), Glutaminase (pfam04960), RAYT (COG1943), LTA_DltD (TIGR04092), PRK05087 (D-alanine--poly(phosphoribitol) ligase subunit DltC), oxalate_frc (TIGR03253), AzgA (COG2252), rpsD (PRK05327), AAK_UMPK-PyrH-Ec (cd04254)
frr (TIGR00496), PRK14830 (undecaprenyl pyrophosphate synthase; Provisional), DUF915 (pfam06028), Acetyltransf_1 (pfam00583), PRK05313 (hypothetical protein; Provisional), ACT_1ZPV (cd04872), Endonuclease_NS (smart00892), PLDc_Bfil_DEXD_like (cd09117), ABC_PhnC_transporter (cd03256), DUF3290 (pfam11694)
YcaP (COG2323), MBG (pfam17883), Gram_pos_anchor (pfam00746), PRK10703 (HTH-type transcriptional repressor PurR), PBP1_GalR (cd01544), Ape1-like_AP-endo (cd09087), NTP-PPase_u3 (cd11540), Tas (COG0667), GT4_GtfA-like (cd04949), Mub_B2 (pfam17966)
PT (pfam04886), KxYKxGKxW (TIGR03715), COG5263 (Glucan-binding domain (YG repeat) ), glucan_65_rpt (TIGR04035), Glyco_hydro_70 (pfam02324), Spr (COG0791), prfC (TIGR00503), nicotinamidase_related (cd01014), hsdR (TIGR00348), HsdR (COG4096)