myRT

myRT report for GCA_000010045.1_ASM1004v1

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Seq: AP008230.1 Desulfitobacterium hafniense Y51 DNA, complete genome (5727534 bp)
Overview 1 RT 1: 49289-56364 bp 2 RT 2: 802133-816457 bp 3 RT 3: 1953653-1965822 bp 4 RT 4: 3182801-3185918 bp 5 RT 5: 3737891-3742430 bp 6 RT 6: 4381195-4387384 bp 7 RT 7: 5167822-5176454 bp 8 RT 8: 5190969-5196965 bp 9 RT 9: 5282264-5288753 bp Neighborhood of RT #1 [49289, 56364] Glyoxalase_2 DUF5131 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [802133, 816723] TIGR02687 Lon_rel_chp RVT-UG2 DEDDh RecQ UvrD UvrD UvrD DUF3578 McrB Neighborhood of RT #3 [1953653, 1965977] COG4120 PhnK RVT-GII GIIM addA_Gpos addA_Gpos addA_Gpos addB_Gpos addB_Gpos Neighborhood of RT #4 [3182801, 3186037] RVT-UG7 Cas5_I-B Cas_Cas7 Neighborhood of RT #5 [3737891, 3742849] SkfB GIIM RVT-GII RVT-GII FadB Neighborhood of RT #6 [4381195, 4387384] RVT-GII Intron_maturas2 KOG4404 YcxB Neighborhood of RT #7 [5167822, 5176454] RVT-GII GIIM RVT-GII Intron_maturas2 HNHc Neighborhood of RT #8 [5190969, 5196965] Dam RVT-GII GIIM Neighborhood of RT #9 [5282264, 5288753] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 49289-49759 bp Ori: BAE81837.1 Feature: domain Description: Glyoxalase_2 Location: 49304-49646 bp Feature: domain Description: Glyoxalase_2 Location: 49304-49646 bp Feature: gene Location: 49756-50541 bp Ori: BAE81838.1 Feature: domain Description: DUF5131 Location: 49822-50452 bp Feature: domain Description: DUF51 31 Location: 49822-50452 bp Feature: gene Location: 51538-53325 bp Ori: BAE81839.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51772-52594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 772-52594 bp Feature: domain Description: Intron_maturas2 Location: 52672-52993 bp Feature: domain Description: Intron_maturas2 Location: 52672-52993 bp Feature: domain Description: HNHc Note: nucleases Location: 53146-53296 bp Feature: domain Description: HNHc Note: nucleases Location: 531 46-53296 bp Feature: gene Location: 54255-54572 bp Feature: gene Location: 54739-56364 bp Feature: gene Location: 802133-804745 bp Ori: BAE82468.1 Feature: domain Description: TIGR02687 Location: 802181-804674 bp Feature: domain Description: TIGR02687 Location: 8021 81 -804674 bp Feature: gene Location: 804761-806836 bp Ori: BAE82469.1 Feature: domain Description: Lon_rel_chp Location: 804815-806831 bp Feature: domain Description: Lon_rel_chp Location: 80481 5-806831 bp Feature: gene Location: 807454-808764 bp Ori: BAE82470.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 807646-808474 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 807646-808474 bp Feature: gene Location: 808893-813695 bp Ori: BAE82471.1 Feature: domain Description: DEDDh Location: 808974-809199 bp Feature: domain Description: DEDDh Location: 808974-8091 99 bp Feature: domain Description: RecQ Location: 809628-811056 bp Feature: domain Description: RecQ Location: 809628-81 1 056 bp Feature: domain Description: UvrD Location: 812034-812313 bp Feature: domain Description: UvrD Location: 81 2034-81 231 3 bp Feature: domain Description: UvrD Location: 812403-812901 bp Feature: domain Description: UvrD Location: 81 2403-81 2901 bp Feature: domain Description: UvrD Location: 813003-813321 bp Feature: domain Description: UvrD Location: 81 3003-81 3321 bp Feature: gene Location: 814060-816723 bp Ori: BAE82472.1 Feature: domain Description: DUF3578 Location: 814537-815077 bp Feature: domain Description: DUF3578 Location: 81 4537-81 5077 bp Feature: domain Description: McrB Location: 815611-816457 bp Feature: domain Description: McrB Location: 81 561 1 -81 6457 bp Feature: gene Location: 1953653-1954582 bp Ori: BAE83471.1 Feature: domain Description: COG4120 Location: 1953665-1954514 bp Feature: domain Description: COG41 20 Location: 1 953665-1 95451 4 bp Feature: gene Location: 1954557-1955360 bp Ori: BAE83472.1 Feature: domain Description: PhnK Location: 1954560-1955343 bp Feature: domain Description: PhnK Location: 1 954560-1 955343 bp Feature: gene Location: 1956132-1957427 bp Ori: BAE83473.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1956372-1956990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 956372-1 956990 bp Feature: domain Description: GIIM Note: maturase Location: 1957041-1957269 bp Feature: domain Description: GIIM Note: maturase Location: 1 957041 -1 957269 bp Feature: gene Location: 1958144-1962322 bp Ori: BAE83474.1 Feature: domain Description: addA_Gpos Location: 1958159-1959752 bp Feature: domain Description: addA_Gpos Location: 1 9581 59-1 959752 bp Feature: domain Description: addA_Gpos Location: 1959878-1961288 bp Feature: domain Description: addA_Gpos Location: 1 959878-1 961 288 bp Feature: domain Description: addA_Gpos Location: 1961441-1962251 bp Feature: domain Description: addA_Gpos Location: 1 961 441 -1 962251 bp Feature: gene Location: 1962315-1965977 bp Ori: BAE83475.1 Feature: domain Description: addB_Gpos Location: 1962321-1965270 bp Feature: domain Description: addB_Gpos Location: 1 962321 -1 965270 bp Feature: domain Description: addB_Gpos Location: 1965321-1965822 bp Feature: domain Description: addB_Gpos Location: 1 965321 -1 965822 bp Feature: gene Location: 3182801-3184378 bp Ori: BAE84593.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3183224-3183614 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 31 83224-31 8361 4 bp Feature: gene Location: 3184439-3185134 bp Ori: BAE84594.1 Feature: domain Description: Cas5_I-B Location: 3184451-3184814 bp Feature: domain Description: Cas5_I-B Location: 31 84451 -31 8481 4 bp Feature: gene Location: 3185174-3186037 bp Ori: BAE84595.1 Feature: domain Description: Cas_Cas7 Location: 3185186-3185918 bp Feature: domain Description: Cas_Cas7 Location: 31 851 86-31 8591 8 bp Feature: gene Location: 3737891-3739348 bp Ori: BAE85098.1 Feature: domain Description: SkfB Location: 3737993-3738485 bp Feature: domain Description: SkfB Location: 3737993-3738485 bp Feature: gene Location: 3739533-3739814 bp Ori: BAE85099.1 Feature: domain Description: GIIM Note: maturase Location: 3739536-3739665 bp Feature: domain Description: GIIM Note: maturase Location: 3739536-3739665 bp Feature: gene Location: 3740287-3740769 bp Ori: BAE85100.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3740455-3740569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3740455-3740569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3740671-3740758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3740671 -3740758 bp Feature: gene Location: 3740824-3741165 bp Feature: gene Location: 3741542-3742849 bp Ori: BAE85102.1 Feature: domain Description: FadB Location: 3741554-3742430 bp Feature: domain Description: FadB Location: 3741 554-3742430 bp Feature: gene Location: 4381195-4381494 bp Feature: gene Location: 4382401-4383255 bp Feature: gene Location: 4383761-4385536 bp Ori: BAE85633.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4384034-4384826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4384034-4384826 bp Feature: domain Description: Intron_maturas2 Location: 4384907-4385198 bp Feature: domain Description: Intron_maturas2 Location: 4384907-43851 98 bp Feature: gene Location: 4385638-4386249 bp Ori: BAE85634.1 Feature: domain Description: KOG4404 Location: 4385680-4385833 bp Feature: domain Description: KOG4404 Location: 4385680-4385833 bp Feature: domain Description: YcxB Location: 4386037-4386208 bp Feature: domain Description: YcxB Location: 4386037-4386208 bp Feature: gene Location: 4386509-4387384 bp Feature: gene Location: 5167822-5168109 bp Feature: gene Location: 5168181-5169128 bp Feature: gene Location: 5169203-5170516 bp Ori: BAE86341.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5169461-5170076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 69461 -51 70076 bp Feature: domain Description: GIIM Note: maturase Location: 5170130-5170361 bp Feature: domain Description: GIIM Note: maturase Location: 51 701 30-51 70361 bp Feature: gene Location: 5171129-5171617 bp Feature: gene Location: 5171960-5173777 bp Ori: BAE86343.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5172224-5173046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 72224-51 73046 bp Feature: domain Description: Intron_maturas2 Location: 5173127-5173442 bp Feature: domain Description: Intron_maturas2 Location: 51 731 27-51 73442 bp Feature: domain Description: HNHc Note: nucleases Location: 5173598-5173748 bp Feature: domain Description: HNHc Note: nucleases Location: 51 73598-51 73748 bp Feature: gene Location: 5174453-5174722 bp Feature: gene Location: 5174691-5176454 bp Feature: gene Location: 5190969-5191904 bp Ori: BAE86361.1 Feature: domain Description: Dam Location: 5190975-5191824 bp Feature: domain Description: Dam Location: 51 90975-51 91 824 bp Feature: gene Location: 5192620-5193291 bp Feature: gene Location: 5193267-5194586 bp Ori: BAE86363.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5193525-5194143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 93525-51 941 43 bp Feature: domain Description: GIIM Note: maturase Location: 5194194-5194425 bp Feature: domain Description: GIIM Note: maturase Location: 51 941 94-51 94425 bp Feature: gene Location: 5195170-5195913 bp Feature: gene Location: 5196402-5196965 bp Feature: gene Location: 5282264-5282674 bp Feature: gene Location: 5282671-5283474 bp Feature: gene Location: 5284320-5286107 bp Ori: BAE86441.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5284554-5285376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5284554-5285376 bp Feature: domain Description: Intron_maturas2 Location: 5285454-5285775 bp Feature: domain Description: Intron_maturas2 Location: 5285454-5285775 bp Feature: domain Description: HNHc Note: nucleases Location: 5285928-5286078 bp Feature: domain Description: HNHc Note: nucleases Location: 5285928-5286078 bp Feature: gene Location: 5286695-5286994 bp Feature: gene Location: 5287059-5288753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyoxalase_2 (pfam12681), DUF5131 (pfam07505), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TIGR02687 (TIGR02687 family protein), Lon_rel_chp (TIGR02653), RVT-UG2, DEDDh (cd06127), RecQ (COG0514)
UvrD (COG0210), DUF3578 (pfam12102), McrB (COG4054), COG4120 (ABC-type uncharacterized transport system, permease component ), PhnK (COG4107), GIIM (pfam08388), addA_Gpos (TIGR02785), addB_Gpos (TIGR02773), RVT-UG7, Cas5_I-B (cd09692)
Cas_Cas7 (pfam05107), SkfB (COG0535), FadB (TIGR02437), KOG4404 (KOG4404, Tandem pore domain K+ channel TASK3/THIK-1 ), YcxB (pfam14317), Dam (pfam05869)