myRT

myRT report for GCA_000010805.1_ASM1080v1

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Seq: AP011117.1 Rhodococcus opacus B4 plasmid pROB02 DNA, complete sequence (244997 bp)
Overview 1 RT 1: 85725-91643 bp Neighborhood of RT #1 [85725, 91663] COG3464 HTH_38 COG3464 RVT_N RVT-GII GIIM Tra5 InsE Feature: gene Location: 85725-87308 bp Ori: BAH47093.1 Feature: domain Description: COG3464 Location: 85812-86478 bp Feature: domain Description: COG3464 Location: 8581 2-86478 bp Feature: domain Description: HTH_38 Location: 86607-86682 bp Feature: domain Description: HTH_38 Location: 86607-86682 bp Feature: domain Description: COG3464 Location: 86748-87294 bp Feature: domain Description: COG3464 Location: 86748-87294 bp Feature: gene Location: 87467-88447 bp Feature: gene Location: 87692-89509 bp Ori: BAH47095.1 Feature: domain Description: RVT_N Location: 87758-87995 bp Feature: domain Description: RVT_N Location: 87758-87995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88055-88718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88055-8871 8 bp Feature: domain Description: GIIM Note: maturase Location: 88784-89018 bp Feature: domain Description: GIIM Note: maturase Location: 88784-8901 8 bp Feature: gene Location: 90177-91229 bp Ori: BAH47096.1 Feature: domain Description: Tra5 Location: 90492-91077 bp Feature: domain Description: Tra5 Location: 90492-91 077 bp Feature: gene Location: 91232-91663 bp Ori: BAH47097.1 Feature: domain Description: InsE Location: 91322-91643 bp Feature: domain Description: InsE Location: 91 322-91 643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), HTH_38 (pfam13936), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Tra5 (COG2801), InsE (COG2963)

Seq: AP011116.1 Rhodococcus opacus B4 plasmid pROB01 DNA, complete sequence (558192 bp)
Overview 1 RT 1: 138197-141910 bp Neighborhood of RT #1 [138197, 142134] DUF4189 Tra8 RVT-GII GIIM InsE PHA02517 Feature: gene Location: 138197-138658 bp Ori: BAH55636.1 Feature: domain Description: DUF4189 Location: 138329-138599 bp Feature: domain Description: DUF4189 Location: 13832 9-138599 bp Feature: gene Location: 138913-139395 bp Ori: BAH55637.1 Feature: domain Description: Tra8 Location: 138925-139330 bp Feature: domain Description: Tra8 Location: 13892 5-139330 bp Feature: gene Location: 139520-140254 bp Ori: BAH55638.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139523-139808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13952 3-139808 bp Feature: domain Description: GIIM Note: maturase Location: 139883-140099 bp Feature: domain Description: GIIM Note: maturase Location: 139883-140099 bp Feature: gene Location: 141131-141454 bp Ori: BAH55639.1 Feature: domain Description: InsE Location: 141149-141449 bp Feature: domain Description: InsE Location: 141149-141449 bp Feature: gene Location: 141451-142134 bp Ori: BAH55640.1 Feature: domain Description: PHA02517 Location: 141526-141910 bp Feature: domain Description: PHA02 517 Location: 14152 6-141910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4189 (pfam13827), Tra8 (COG2826), RVT-GII, GIIM (pfam08388), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: AP011115.1 Rhodococcus opacus B4 DNA, complete genome (7913450 bp)
Overview 1 RT 1: 560631-565740 bp 2 RT 2: 3106634-3112951 bp 3 RT 3: 4898664-4905026 bp Neighborhood of RT #1 [560631, 565740] NfsA_FRP SDR_c RVT-Retrons RsdA_SigD_bd Neighborhood of RT #2 [3106634, 3112977] DDE_Tnp_1_4 DDE_Tnp_1_4 RVT_N RVT-GII GIIM CitE CaiB Neighborhood of RT #3 [4898664, 4905031] AcrR PRK07801 RVT_N RVT-GII GIIM DDE_Tnp_1_4 HypA Feature: gene Location: 560631-561458 bp Ori: BAH48791.1 Feature: domain Description: NfsA_FRP Location: 560721-561381 bp Feature: domain Description: NfsA_FRP Location: 560721-5613 81 bp Feature: gene Location: 561638-562378 bp Ori: BAH48792.1 Feature: domain Description: SDR_c Location: 561656-562319 bp Feature: domain Description: SDR_c Location: 561656-5623 19 bp Feature: gene Location: 562381-563634 bp Ori: BAH48793.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 562798-563392 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 562798-563 3 92 bp Feature: gene Location: 564241-565353 bp Ori: BAH48794.1 Feature: domain Description: RsdA_SigD_bd Location: 564319-564454 bp Feature: domain Description: RsdA_SigD_bd Location: 5643 19-564454 bp Feature: gene Location: 565468-565740 bp Feature: gene Location: 3106634-3108382 bp Ori: BAH51131.1 Feature: domain Description: DDE_Tnp_1_4 Location: 3106727-3107516 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3 106727-3 107516 bp Feature: gene Location: 3106888-3107361 bp Ori: BAH51132.1 Feature: domain Description: DDE_Tnp_1_4 Location: 3107020-3107308 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3 107020-3 1073 08 bp Feature: gene Location: 3108393-3110171 bp Ori: BAH51133.1 Feature: domain Description: RVT_N Location: 3108468-3108711 bp Feature: domain Description: RVT_N Location: 3 108468-3 108711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3108765-3109422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 108765-3 109422 bp Feature: domain Description: GIIM Note: maturase Location: 3109473-3109707 bp Feature: domain Description: GIIM Note: maturase Location: 3 109473 -3 109707 bp Feature: gene Location: 3110942-3111820 bp Ori: BAH51134.1 Feature: domain Description: CitE Location: 3110960-3111815 bp Feature: domain Description: CitE Location: 3 110960-3 111815 bp Feature: gene Location: 3111817-3112977 bp Ori: BAH51135.1 Feature: domain Description: CaiB Location: 3111820-3112951 bp Feature: domain Description: CaiB Location: 3 111820-3 112951 bp Feature: gene Location: 4898664-4899275 bp Ori: BAH52790.1 Feature: domain Description: AcrR Location: 4898706-4899207 bp Feature: domain Description: AcrR Location: 4898706-4899207 bp Feature: gene Location: 4899296-4900444 bp Ori: BAH52791.1 Feature: domain Description: PRK07801 Location: 4899299-4900442 bp Feature: domain Description: PRK07801 Location: 4899299-4900442 bp Feature: gene Location: 4901221-4902999 bp Ori: BAH52792.1 Feature: domain Description: RVT_N Location: 4901296-4901539 bp Feature: domain Description: RVT_N Location: 4901296-490153 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4901593-4902250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4901593 -4902250 bp Feature: domain Description: GIIM Note: maturase Location: 4902301-4902535 bp Feature: domain Description: GIIM Note: maturase Location: 49023 01-490253 5 bp Feature: gene Location: 4903010-4904470 bp Ori: BAH52793.1 Feature: domain Description: DDE_Tnp_1_4 Location: 4903109-4904441 bp Feature: domain Description: DDE_Tnp_1_4 Location: 4903 109-4904441 bp Feature: gene Location: 4904702-4905031 bp Ori: BAH52794.1 Gene: hypA Feature: domain Description: HypA Location: 4904705-4905026 bp Feature: domain Description: HypA Location: 4904705-4905026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NfsA_FRP, SDR_c (cd05233), RVT-Retrons, RsdA_SigD_bd (pfam16751), DDE_Tnp_1_4 (pfam13701), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), CitE (COG2301), CaiB (COG1804)
AcrR (COG1309), PRK07801 (acetyl-CoA C-acetyltransferase), HypA (pfam01155)