myRT

myRT report for GCA_000011065.1_ASM1106v1

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Seq: AE015928.1 Bacteroides thetaiotaomicron VPI-5482, complete genome (6260361 bp)
Overview 1 RT 1: 2870327-2875784 bp 2 RT 2: 2885216-2889620 bp 3 RT 3: 3070657-3076467 bp 4 RT 4: 3240009-3246719 bp 5 RT 5: 3251427-3261897 bp 6 RT 6: 5717073-5726948 bp Neighborhood of RT #1 [2870327, 2875840] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Neighborhood of RT #2 [2885216, 2889620] YbdN RVT-DGRs Avd_like Neighborhood of RT #3 [3070657, 3076562] RVT-GII GIIM RVT-GII KOG1378 FAD_oxidored Neighborhood of RT #4 [3240009, 3246754] DUF4141 DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Neighborhood of RT #5 [3251427, 3262226] Relaxase YWFCY SXT_TraD TrwB RVT-GII GIIM RVT-GII GIIM AtoC TMAO_torS Neighborhood of RT #6 [5717073, 5727058] RVT-Retrons MTES_1575 DUF3320 DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 Feature: gene Location: 2870327-2870599 bp Ori: AAO77402.1 Feature: domain Description: DUF3876 Location: 2870354-2870585 bp Feature: domain Description: DUF3876 Location: 2870354-2870585 bp Feature: gene Location: 2870606-2871208 bp Ori: AAO77403.1 Feature: domain Description: Bac_Flav_CT_G Location: 2870720-2871182 bp Feature: domain Description: Bac_Flav_CT_G Location: 2870720-2871 1 82 bp Feature: gene Location: 2871211-2872869 bp Ori: AAO77404.1 Feature: domain Description: RVT_N Location: 2871265-2871508 bp Feature: domain Description: RVT_N Location: 2871 265-2871 508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2871553-2872204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2871 553-2872204 bp Feature: domain Description: GIIM Note: maturase Location: 2872255-2872489 bp Feature: domain Description: GIIM Note: maturase Location: 2872255-2872489 bp Feature: gene Location: 2873493-2875520 bp Ori: AAO77405.1 Feature: domain Description: Bac_Flav_CT_G Location: 2873496-2875515 bp Feature: domain Description: Bac_Flav_CT_G Location: 2873496-287551 5 bp Feature: gene Location: 2875505-2875840 bp Ori: AAO77406.1 Feature: domain Description: DUF4133 Location: 2875523-2875784 bp Feature: domain Description: DUF41 33 Location: 2875523-2875784 bp Feature: gene Location: 2885216-2886490 bp Ori: AAO77418.1 Feature: domain Description: YbdN Location: 2885231-2886470 bp Feature: domain Description: YbdN Location: 2885231 -2886470 bp Feature: gene Location: 2886497-2886952 bp Feature: gene Location: 2886967-2887986 bp Ori: AAO77420.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2886970-2887597 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2886970-2887597 bp Feature: gene Location: 2888749-2888982 bp Ori: AAO77421.1 Feature: domain Description: Avd_like Location: 2888758-2888941 bp Feature: domain Description: Avd_like Location: 2888758-2888941 bp Feature: gene Location: 2889138-2889620 bp Feature: gene Location: 3070657-3070863 bp Feature: gene Location: 3070999-3071256 bp Feature: gene Location: 3071356-3072045 bp Ori: AAO77562.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3071377-3071779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3071 377-3071 779 bp Feature: domain Description: GIIM Note: maturase Location: 3071791-3072022 bp Feature: domain Description: GIIM Note: maturase Location: 3071 791 -3072022 bp Feature: gene Location: 3072048-3072536 bp Ori: AAO77563.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3072384-3072522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3072384-3072522 bp Feature: gene Location: 3073421-3074590 bp Ori: AAO77564.1 Feature: domain Description: KOG1378 Location: 3073532-3074444 bp Feature: domain Description: KOG1 378 Location: 3073532-3074444 bp Feature: gene Location: 3074682-3076562 bp Ori: AAO77565.1 Feature: domain Description: FAD_oxidored Location: 3075258-3076467 bp Feature: domain Description: FAD_oxidored Location: 3075258-3076467 bp Feature: gene Location: 3240009-3240653 bp Ori: AAO77707.1 Feature: domain Description: DUF4141 Location: 3240039-3240192 bp Feature: domain Description: DUF41 41 Location: 3240039-32401 92 bp Feature: gene Location: 3240650-3241021 bp Ori: AAO77708.1 Feature: domain Description: DUF3876 Location: 3240731-3241004 bp Feature: domain Description: DUF3876 Location: 3240731 -3241 004 bp Feature: gene Location: 3241259-3243082 bp Ori: AAO77709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3241523-3242345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3241 523-3242345 bp Feature: domain Description: Intron_maturas2 Location: 3242519-3242762 bp Feature: domain Description: Intron_maturas2 Location: 324251 9-3242762 bp Feature: domain Description: HNHc Note: nucleases Location: 3242873-3243044 bp Feature: domain Description: HNHc Note: nucleases Location: 3242873-3243044 bp Feature: gene Location: 3243651-3246050 bp Ori: AAO77710.1 Feature: domain Description: Bac_Flav_CT_G Location: 3243654-3246039 bp Feature: domain Description: Bac_Flav_CT_G Location: 3243654-3246039 bp Feature: gene Location: 3246047-3246754 bp Ori: AAO77711.1 Feature: domain Description: DUF4133 Location: 3246449-3246719 bp Feature: domain Description: DUF41 33 Location: 3246449-324671 9 bp Feature: gene Location: 3251427-3252581 bp Ori: AAO77720.1 Feature: domain Description: Relaxase Location: 3251454-3252108 bp Feature: domain Description: Relaxase Location: 3251 454-32521 08 bp Feature: gene Location: 3252620-3254665 bp Ori: AAO77721.1 Feature: domain Description: YWFCY Location: 3252626-3252803 bp Feature: domain Description: YWFCY Location: 3252626-3252803 bp Feature: domain Description: SXT_TraD Location: 3253226-3253463 bp Feature: domain Description: SXT_TraD Location: 3253226-3253463 bp Feature: domain Description: TrwB Location: 3253706-3254339 bp Feature: domain Description: TrwB Location: 3253706-3254339 bp Feature: gene Location: 3254829-3256121 bp Ori: AAO77722.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3255039-3255696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3255039-3255696 bp Feature: domain Description: GIIM Note: maturase Location: 3255774-3255981 bp Feature: domain Description: GIIM Note: maturase Location: 3255774-3255981 bp Feature: gene Location: 3256445-3256720 bp Feature: gene Location: 3256696-3258102 bp Ori: AAO77724.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3257038-3257656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3257038-3257656 bp Feature: domain Description: GIIM Note: maturase Location: 3257710-3257941 bp Feature: domain Description: GIIM Note: maturase Location: 325771 0-3257941 bp Feature: gene Location: 3258569-3259849 bp Ori: AAO77725.1 Feature: domain Description: AtoC Location: 3258572-3259844 bp Feature: domain Description: AtoC Location: 3258572-3259844 bp Feature: gene Location: 3259854-3262226 bp Ori: AAO77726.1 Feature: domain Description: TMAO_torS Location: 3260817-3261897 bp Feature: domain Description: TMAO_torS Location: 326081 7-3261 897 bp Feature: gene Location: 5717073-5717273 bp Feature: gene Location: 5717702-5719861 bp Feature: gene Location: 5720067-5721200 bp Ori: AAO79447.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5720391-5720937 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5720391 -5720937 bp Feature: gene Location: 5721237-5722175 bp Ori: AAO79448.1 Feature: domain Description: MTES_1575 Location: 5721240-5721507 bp Feature: domain Description: MTES_1 575 Location: 5721 240-5721 507 bp Feature: domain Description: DUF3320 Location: 5721681-5721825 bp Feature: domain Description: DUF3320 Location: 5721 681 -5721 825 bp Feature: gene Location: 5722241-5727058 bp Ori: AAO79449.1 Feature: domain Description: DUF4011 Location: 5723396-5723909 bp Feature: domain Description: DUF401 1 Location: 5723396-5723909 bp Feature: domain Description: DEXXQc_SF1 Location: 5724248-5724791 bp Feature: domain Description: DEXXQc_SF1 Location: 5724248-5724791 bp Feature: domain Description: DEXXQc_SF1 Location: 5725682-5726435 bp Feature: domain Description: DEXXQc_SF1 Location: 5725682-5726435 bp Feature: domain Description: KOG1803 Location: 5726570-5726948 bp Feature: domain Description: KOG1 803 Location: 5726570-5726948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), YbdN (COG3969), RVT-DGRs, Avd_like (cd16376), KOG1378 (KOG1378, Purple acid phosphatase )
FAD_oxidored (pfam12831), DUF4141 (pfam13605), Intron_maturas2 (pfam01348), HNHc (smart00507), Relaxase (pfam03432), YWFCY (pfam14293), SXT_TraD (TIGR03743), TrwB, AtoC (COG2204), TMAO_torS (TIGR02956)
RVT-Retrons, MTES_1575 (pfam18741), DUF3320 (pfam11784), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase )