myRT

myRT report for GCA_000011345.1_ASM1134v1

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Seq: BA000039.2 Thermosynechococcus elongatus BP-1 DNA, complete genome (2593857 bp)
Overview 1 RT 1: 25137-31976 bp 2 RT 2: 89502-95677 bp 3 RT 3: 288984-298111 bp 4 RT 4: 518350-524068 bp 5 RT 5: 622140-628836 bp 6 RT 6: 1021861-1028338 bp 7 RT 7: 1146662-1154064 bp 8 RT 8: 1193072-1202222 bp Neighborhood of RT #1 [25137, 31984] PRK09303 RVT_N RVT-GII GIIM HNHc lipid_A_lpxD NblA Neighborhood of RT #2 [89502, 95677] agmatine_aguB ftrB RVT_N RVT-GII GIIM HNHc PRK14012 Neighborhood of RT #3 [288984, 298152] NHL_like_3 YebA clpC RVT_N RVT-GII GIIM HNHc HAD_BPGM-like BMC_like_1_repeat1 BMC_like_1_repeat1 Neighborhood of RT #4 [518350, 524079] STE14 Fer4_5 Fer4_5 RVT_N RVT-GII GIIM HNHc ddl DUF2862 Neighborhood of RT #5 [622140, 628844] PRK07406 RVT_N RVT-GII GIIM HNH CutA1 PRK05952 Neighborhood of RT #6 [1021861, 1028376] ispG_gcpE KOG3275 RVT_N RVT-GII DUF4096 COG3293 RVT-GII GIIM HNH PRK14243 gatA Neighborhood of RT #7 [1146662, 1154078] MacB_PCD RVT_N RVT-GII urea_ABC_UrtA urea_trans_UrtB urea_trans_UrtB Neighborhood of RT #8 [1193072, 1202222] ACR_tran RVT_N RVT-GII GIIM HNHc InsQ Feature: gene Location: 25137-26279 bp Ori: BAC07582.1 Gene: tlr0029 Feature: domain Description: PRK09303 Location: 25158-26277 bp Feature: domain Description: PRK09303 Location: 251 58-26277 bp Feature: gene Location: 26276-27235 bp Feature: gene Location: 28791-30485 bp Ori: BAC07584.1 Gene: tlr0031 Feature: domain Description: RVT_N Location: 28866-29109 bp Feature: domain Description: RVT_N Location: 28866-291 09 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29154-29772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 54-29772 bp Feature: domain Description: GIIM Note: maturase Location: 29823-30057 bp Feature: domain Description: GIIM Note: maturase Location: 29823-30057 bp Feature: domain Description: HNHc Note: nucleases Location: 30264-30438 bp Feature: domain Description: HNHc Note: nucleases Location: 30264-30438 bp Feature: gene Location: 30580-31596 bp Ori: BAC07585.1 Gene: tll0032 Feature: domain Description: lipid_A_lpxD Location: 30595-31564 bp Feature: domain Description: lipid_A_lpxD Location: 30595-31 564 bp Feature: gene Location: 31799-31984 bp Ori: BAC07586.1 Gene: nblA Feature: domain Description: NblA Location: 31832-31976 bp Feature: domain Description: NblA Location: 31 832-31 976 bp Feature: gene Location: 89502-90359 bp Ori: BAC07665.1 Gene: tlr0112 Feature: domain Description: agmatine_aguB Location: 89514-90336 bp Feature: domain Description: agmatine_aguB Location: 8951 4-90336 bp Feature: gene Location: 90858-91229 bp Ori: BAC07666.1 Gene: ftrC Feature: domain Description: ftrB Location: 90882-91206 bp Feature: domain Description: ftrB Location: 90882-91 206 bp Feature: gene Location: 91446-93134 bp Ori: BAC07667.1 Gene: tll0114 Feature: domain Description: RVT_N Location: 91515-91758 bp Feature: domain Description: RVT_N Location: 91 51 5-91 758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91803-92421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 803-92421 bp Feature: domain Description: GIIM Note: maturase Location: 92472-92706 bp Feature: domain Description: GIIM Note: maturase Location: 92472-92706 bp Feature: domain Description: HNHc Note: nucleases Location: 92913-93087 bp Feature: domain Description: HNHc Note: nucleases Location: 9291 3-93087 bp Feature: gene Location: 93834-95027 bp Ori: BAC07668.1 Gene: nifS Feature: domain Description: PRK14012 Location: 93882-95019 bp Feature: domain Description: PRK1 401 2 Location: 93882-9501 9 bp Feature: gene Location: 95342-95677 bp Feature: gene Location: 288984-290705 bp Ori: BAC07859.1 Gene: tll0306 Feature: domain Description: NHL_like_3 Location: 289389-289674 bp Feature: domain Description: NHL_like_3 Location: 289389-289674 bp Feature: domain Description: YebA Location: 290064-290592 bp Feature: domain Description: YebA Location: 290064-290592 bp Feature: gene Location: 290720-293194 bp Ori: BAC07860.1 Gene: clpC Feature: domain Description: clpC Location: 290723-293147 bp Feature: domain Description: clpC Location: 290723-2931 47 bp Feature: gene Location: 294853-296547 bp Ori: BAC07861.1 Gene: tlr0308 Feature: domain Description: RVT_N Location: 294928-295171 bp Feature: domain Description: RVT_N Location: 294928-2951 71 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295216-295834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29521 6-295834 bp Feature: domain Description: GIIM Note: maturase Location: 295885-296119 bp Feature: domain Description: GIIM Note: maturase Location: 295885-2961 1 9 bp Feature: domain Description: HNHc Note: nucleases Location: 296326-296500 bp Feature: domain Description: HNHc Note: nucleases Location: 296326-296500 bp Feature: gene Location: 296858-297466 bp Ori: BAC07862.1 Gene: tlr0310 Feature: domain Description: HAD_BPGM-like Location: 296864-297374 bp Feature: domain Description: HAD_BPGM-like Location: 296864-297374 bp Feature: gene Location: 297514-298152 bp Ori: BAC07863.1 Gene: tlr0311 Feature: domain Description: BMC_like_1_repeat1 Location: 297526-297856 bp Feature: domain Description: BMC_like_1 _repeat1 Location: 297526-297856 bp Feature: domain Description: BMC_like_1_repeat1 Location: 297889-298111 bp Feature: domain Description: BMC_like_1 _repeat1 Location: 297889-2981 1 1 bp Feature: gene Location: 518350-518844 bp Ori: BAC08072.1 Gene: tll0520 Feature: domain Description: STE14 Location: 518365-518839 bp Feature: domain Description: STE1 4 Location: 51 8365-51 8839 bp Feature: gene Location: 518913-519461 bp Ori: BAC08073.1 Gene: tll0521 Feature: domain Description: Fer4_5 Location: 519024-519135 bp Feature: domain Description: Fer4_5 Location: 51 9024-51 91 35 bp Feature: domain Description: Fer4_5 Location: 519294-519405 bp Feature: domain Description: Fer4_5 Location: 51 9294-51 9405 bp Feature: gene Location: 520930-522624 bp Ori: BAC08074.1 Gene: tlr0522 Feature: domain Description: RVT_N Location: 521005-521248 bp Feature: domain Description: RVT_N Location: 521 005-521 248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521293-521911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521 293-521 91 1 bp Feature: domain Description: GIIM Note: maturase Location: 521962-522196 bp Feature: domain Description: GIIM Note: maturase Location: 521 962-5221 96 bp Feature: domain Description: HNHc Note: nucleases Location: 522403-522577 bp Feature: domain Description: HNHc Note: nucleases Location: 522403-522577 bp Feature: gene Location: 522781-523812 bp Ori: BAC08075.1 Gene: tll0523 Feature: domain Description: ddl Location: 522787-523801 bp Feature: domain Description: ddl Location: 522787-523801 bp Feature: gene Location: 523885-524079 bp Ori: BAC08076.1 Gene: tsr0524 Feature: domain Description: DUF2862 Location: 523894-524068 bp Feature: domain Description: DUF2862 Location: 523894-524068 bp Feature: gene Location: 622140-623396 bp Ori: BAC08169.1 Gene: sigA Feature: domain Description: PRK07406 Location: 622323-623394 bp Feature: domain Description: PRK07406 Location: 622323-623394 bp Feature: gene Location: 623862-624557 bp Feature: gene Location: 625568-627256 bp Ori: BAC08171.1 Gene: tlr0620 Feature: domain Description: RVT_N Location: 625637-625880 bp Feature: domain Description: RVT_N Location: 625637-625880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625925-626543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625925-626543 bp Feature: domain Description: GIIM Note: maturase Location: 626594-626828 bp Feature: domain Description: GIIM Note: maturase Location: 626594-626828 bp Feature: domain Description: HNH Note: nucleases Location: 627077-627215 bp Feature: domain Description: HNH Note: nucleases Location: 627077-62721 5 bp Feature: gene Location: 627342-627695 bp Ori: BAC08172.1 Gene: tll0621 Feature: domain Description: CutA1 Location: 627381-627672 bp Feature: domain Description: CutA1 Location: 627381 -627672 bp Feature: gene Location: 627750-628844 bp Ori: BAC08173.1 Gene: tlr0622 Feature: domain Description: PRK05952 Location: 627753-628836 bp Feature: domain Description: PRK05952 Location: 627753-628836 bp Feature: gene Location: 1021861-1023069 bp Ori: BAC08548.1 Gene: tlr0996 Feature: domain Description: ispG_gcpE Location: 1021918-1023043 bp Feature: domain Description: ispG_gcpE Location: 1 021 91 8-1 023043 bp Feature: gene Location: 1023098-1023442 bp Ori: BAC08549.1 Gene: tlr0997 Feature: domain Description: KOG3275 Location: 1023107-1023440 bp Feature: domain Description: KOG3275 Location: 1 0231 07-1 023440 bp Feature: gene Location: 1024074-1024538 bp Ori: BAC08550.1 Gene: tlr0998 Feature: domain Description: RVT_N Location: 1024143-1024386 bp Feature: domain Description: RVT_N Location: 1 0241 43-1 024386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1024431-1024524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 024431 -1 024524 bp Feature: gene Location: 1024580-1025056 bp Ori: BAC08551.1 Gene: tlr0999 Feature: domain Description: DUF4096 Location: 1024613-1024829 bp Feature: domain Description: DUF4096 Location: 1 02461 3-1 024829 bp Feature: gene Location: 1025140-1025346 bp Ori: BAC08552.1 Gene: tsr1000 Feature: domain Description: COG3293 Location: 1025152-1025338 bp Feature: domain Description: COG3293 Location: 1 0251 52-1 025338 bp Feature: gene Location: 1025653-1026606 bp Ori: BAC08553.1 Gene: tlr1001 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025656-1025893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 025656-1 025893 bp Feature: domain Description: GIIM Note: maturase Location: 1025944-1026178 bp Feature: domain Description: GIIM Note: maturase Location: 1 025944-1 0261 78 bp Feature: domain Description: HNH Note: nucleases Location: 1026427-1026565 bp Feature: domain Description: HNH Note: nucleases Location: 1 026427-1 026565 bp Feature: gene Location: 1026703-1026882 bp Ori: BAC08554.1 Gene: tsr1002 Feature: domain Description: PRK14243 Location: 1026706-1026877 bp Feature: domain Description: PRK1 4243 Location: 1 026706-1 026877 bp Feature: gene Location: 1026886-1028376 bp Ori: BAC08555.1 Gene: tll1003 Feature: domain Description: gatA Location: 1026964-1028338 bp Feature: domain Description: gatA Location: 1 026964-1 028338 bp Feature: gene Location: 1146662-1146997 bp Feature: gene Location: 1146963-1147745 bp Ori: BAC08670.1 Gene: tll1117 Feature: domain Description: MacB_PCD Location: 1147017-1147686 bp Feature: domain Description: MacB_PCD Location: 1 1 4701 7-1 1 47686 bp Feature: gene Location: 1149586-1150407 bp Ori: BAC08671.1 Gene: tlr1118 Feature: domain Description: RVT_N Location: 1149661-1149904 bp Feature: domain Description: RVT_N Location: 1 1 49661 -1 1 49904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1149949-1150393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 49949-1 1 50393 bp Feature: gene Location: 1151497-1152810 bp Ori: BAC08672.1 Gene: tlr1120 Feature: domain Description: urea_ABC_UrtA Location: 1151644-1152721 bp Feature: domain Description: urea_ABC_UrtA Location: 1 1 51 644-1 1 52721 bp Feature: gene Location: 1152921-1154078 bp Ori: BAC08673.1 Gene: tlr1121 Feature: domain Description: urea_trans_UrtB Location: 1152939-1153419 bp Feature: domain Description: urea_trans_UrtB Location: 1 1 52939-1 1 5341 9 bp Feature: domain Description: urea_trans_UrtB Location: 1153467-1154064 bp Feature: domain Description: urea_trans_UrtB Location: 1 1 53467-1 1 54064 bp Feature: gene Location: 1193072-1196263 bp Ori: BAC08711.1 Gene: tlr1159 Feature: domain Description: ACR_tran Location: 1193096-1196165 bp Feature: domain Description: ACR_tran Location: 1 1 93096-1 1 961 65 bp Feature: gene Location: 1196662-1196904 bp Feature: gene Location: 1198401-1200095 bp Ori: BAC08713.1 Gene: tlr1161 Feature: domain Description: RVT_N Location: 1198476-1198719 bp Feature: domain Description: RVT_N Location: 1 1 98476-1 1 9871 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1198764-1199382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 98764-1 1 99382 bp Feature: domain Description: GIIM Note: maturase Location: 1199433-1199667 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 99433-1 1 99667 bp Feature: domain Description: HNHc Note: nucleases Location: 1199874-1200048 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 99874-1 200048 bp Feature: gene Location: 1200443-1201669 bp Ori: BAC08714.1 Gene: tll1162 Feature: domain Description: InsQ Location: 1200506-1201619 bp Feature: domain Description: InsQ Location: 1 200506-1 201 61 9 bp Feature: gene Location: 1201839-1202222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09303 (histidine kinase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), lipid_A_lpxD (TIGR01853), NblA (pfam04485), agmatine_aguB (TIGR03381), ftrB (PRK09392), PRK14012 (IscS subfamily cysteine desulfurase)
NHL_like_3 (cd14956), YebA (COG1305), clpC, HAD_BPGM-like (cd16423), BMC_like_1_repeat1 (cd07051), STE14 (COG2020), Fer4_5 (pfam12801), ddl (PRK01966), DUF2862 (pfam11061), PRK07406 (RNA polymerase sigma factor RpoD; Validated)
HNH (pfam01844), CutA1 (pfam03091), PRK05952 (beta-ketoacyl-ACP synthase), ispG_gcpE (TIGR00612), KOG3275 (KOG3275, Zinc-binding protein of the histidine triad (HIT) family ), DUF4096 (pfam13340), COG3293 (Transposase ), PRK14243 (phosphate transporter ATP-binding protein; Provisional), gatA (TIGR00132), MacB_PCD (pfam12704)
urea_ABC_UrtA (TIGR03407), urea_trans_UrtB (TIGR03409), ACR_tran (pfam00873), InsQ (COG0675)