myRT

myRT report for GCA_000011365.1_ASM1136v1

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Seq: BA000040.2 Bradyrhizobium diazoefficiens USDA 110 DNA, complete genome (9105828 bp)
Overview 1 RT 1: 196597-202931 bp 2 RT 2: 1984644-1991782 bp 3 RT 3: 2068561-2073928 bp 4 RT 4: 2118539-2124160 bp 5 RT 5: 2210543-2215455 bp 6 RT 6: 8995713-9000618 bp 7 RT 7: 9006361-9009430 bp 8 RT 8: 9100093-9103072 bp Neighborhood of RT #1 [196597, 203020] RVT-UG12 PRK12904 SurA_N_3 SurA Neighborhood of RT #2 [1984644, 1991889] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII RVT-GII Resolvase Recombinase Zn_ribbon_recom group_II_RT_mat Neighborhood of RT #3 [2068561, 2074245] DUF4096 DDE_Tnp_1_2 RVT-GII DDE_5 CoiA Neighborhood of RT #4 [2118539, 2124160] DUF772 DDE_Tnp_1 DDE_Tnp_1 RVT-GII Resolvase Recombinase Zn_ribbon_recom PHA00617 RVT-GII GIIM Neighborhood of RT #5 [2210543, 2215577] RVT-GII GIIM HTH_Tnp_1 Tra5 Neighborhood of RT #6 [8995713, 9000680] INT_RitC_C_like DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Neighborhood of RT #7 [9006361, 9009471] COG5659 RVT-GII RVT-GII MmsB Neighborhood of RT #8 [9100093, 9103083] COG5489 HU_IHF RVT-GII DUF3892 Feature: gene Location: 196597-196788 bp Feature: gene Location: 196791-197453 bp Feature: gene Location: 197458-198510 bp Ori: BAC45468.1 Gene: bll0203 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 197839-198295 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 97839-1 98295 bp Feature: gene Location: 198903-201743 bp Ori: BAC45469.1 Gene: secA Feature: domain Description: PRK12904 Location: 198915-201735 bp Feature: domain Description: PRK1 2904 Location: 1 9891 5-201 735 bp Feature: gene Location: 202049-203020 bp Ori: BAC45470.1 Gene: blr0205 Feature: domain Description: SurA_N_3 Location: 202145-202394 bp Feature: domain Description: SurA_N_3 Location: 2021 45-202394 bp Feature: domain Description: SurA Location: 202418-202931 bp Feature: domain Description: SurA Location: 20241 8-202931 bp Feature: gene Location: 1984644-1986023 bp Ori: BAC47099.1 Gene: blr1834 Feature: domain Description: COG4584 Location: 1984740-1985541 bp Feature: domain Description: COG4584 Location: 1 984740-1 985541 bp Feature: domain Description: COG4584 Location: 1985571-1986015 bp Feature: domain Description: COG4584 Location: 1 985571 -1 98601 5 bp Feature: gene Location: 1986029-1986760 bp Ori: BAC47100.1 Gene: blr1835 Feature: domain Description: IstB_IS21_ATP Location: 1986050-1986134 bp Feature: domain Description: IstB_IS21 _ATP Location: 1 986050-1 9861 34 bp Feature: domain Description: IstB_IS21 Location: 1986140-1986587 bp Feature: domain Description: IstB_IS21 Location: 1 9861 40-1 986587 bp Feature: gene Location: 1986815-1987273 bp Ori: BAC47101.1 Gene: bll1836 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1987037-1987136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 987037-1 9871 36 bp Feature: gene Location: 1988244-1988993 bp Ori: BAC47102.1 Gene: blr1837 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1988598-1988991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 988598-1 988991 bp Feature: gene Location: 1989561-1991423 bp Ori: BAC47103.1 Gene: blr1838 Feature: domain Description: Resolvase Location: 1989573-1990014 bp Feature: domain Description: Resolvase Location: 1 989573-1 99001 4 bp Feature: domain Description: Recombinase Location: 1990101-1990461 bp Feature: domain Description: Recombinase Location: 1 9901 01 -1 990461 bp Feature: domain Description: Zn_ribbon_recom Location: 1990503-1990689 bp Feature: domain Description: Zn_ribbon_recom Location: 1 990503-1 990689 bp Feature: gene Location: 1991371-1991889 bp Ori: BAC47104.1 Gene: blr1839 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1991383-1991782 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 991 383-1 991 782 bp Feature: gene Location: 2068561-2068953 bp Ori: BAC47178.1 Gene: blr1913 Feature: domain Description: DUF4096 Location: 2068585-2068798 bp Feature: domain Description: DUF4096 Location: 2068585-2068798 bp Feature: gene Location: 2068697-2069317 bp Ori: BAC47179.1 Gene: blr1914 Feature: domain Description: DDE_Tnp_1_2 Location: 2069066-2069303 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 2069066-2069303 bp Feature: gene Location: 2069705-2071180 bp Ori: BAC47180.1 Gene: blr1915 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2070113-2070803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20701 1 3-2070803 bp Feature: gene Location: 2071304-2073064 bp Ori: BAC47181.1 Gene: blr1916 Feature: domain Description: DDE_5 Location: 2071382-2072174 bp Feature: domain Description: DDE_5 Location: 2071 382-20721 74 bp Feature: gene Location: 2073541-2074245 bp Ori: BAC47182.1 Gene: bll1917 Feature: domain Description: CoiA Location: 2073589-2073928 bp Feature: domain Description: CoiA Location: 2073589-2073928 bp Feature: gene Location: 2118539-2118643 bp Feature: gene Location: 2118640-2119986 bp Ori: BAC47222.1 Gene: bll1957 Feature: domain Description: DUF772 Location: 2118799-2119015 bp Feature: domain Description: DUF772 Location: 21 1 8799-21 1 901 5 bp Feature: domain Description: DDE_Tnp_1 Location: 2119468-2119687 bp Feature: domain Description: DDE_Tnp_1 Location: 21 1 9468-21 1 9687 bp Feature: domain Description: DDE_Tnp_1 Location: 2119759-2119876 bp Feature: domain Description: DDE_Tnp_1 Location: 21 1 9759-21 1 9876 bp Feature: gene Location: 2120252-2120686 bp Ori: BAC47223.1 Gene: blr1958 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2120270-2120684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 20270-21 20684 bp Feature: gene Location: 2120576-2122333 bp Ori: BAC47224.1 Gene: bll1959 Feature: domain Description: Resolvase Location: 2120588-2121029 bp Feature: domain Description: Resolvase Location: 21 20588-21 21 029 bp Feature: domain Description: Recombinase Location: 2121116-2121476 bp Feature: domain Description: Recombinase Location: 21 21 1 1 6-21 21 476 bp Feature: domain Description: Zn_ribbon_recom Location: 2121518-2121704 bp Feature: domain Description: Zn_ribbon_recom Location: 21 21 51 8-21 21 704 bp Feature: gene Location: 2122474-2122803 bp Ori: BAC47225.1 Gene: bll1960 Feature: domain Description: PHA00617 Location: 2122600-2122786 bp Feature: domain Description: PHA0061 7 Location: 21 22600-21 22786 bp Feature: gene Location: 2122938-2123534 bp Ori: BAC47226.1 Gene: blr1961 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2122950-2123163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 22950-21 231 63 bp Feature: domain Description: GIIM Note: maturase Location: 2123238-2123442 bp Feature: domain Description: GIIM Note: maturase Location: 21 23238-21 23442 bp Feature: gene Location: 2123522-2123761 bp Feature: gene Location: 2123792-2124160 bp Feature: gene Location: 2210543-2210842 bp Feature: gene Location: 2211337-2211543 bp Feature: gene Location: 2213052-2214296 bp Ori: BAC47317.1 Gene: blr2052 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2213253-2213907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 3253-221 3907 bp Feature: domain Description: GIIM Note: maturase Location: 2213988-2214216 bp Feature: domain Description: GIIM Note: maturase Location: 221 3988-221 421 6 bp Feature: gene Location: 2214422-2214727 bp Ori: BAC47318.1 Gene: blr2053 Feature: domain Description: HTH_Tnp_1 Location: 2214479-2214686 bp Feature: domain Description: HTH_Tnp_1 Location: 221 4479-221 4686 bp Feature: gene Location: 2214705-2215577 bp Ori: BAC47319.1 Gene: blr2054 Feature: domain Description: Tra5 Location: 2214747-2215455 bp Feature: domain Description: Tra5 Location: 221 4747-221 5455 bp Feature: gene Location: 8995713-8996813 bp Ori: BAC53458.1 Gene: blr8193 Feature: domain Description: INT_RitC_C_like Location: 8995962-8996517 bp Feature: domain Description: INT_RitC_C_like Location: 8995962-899651 7 bp Feature: gene Location: 8996641-8997231 bp Ori: BAC53459.1 Gene: blr8194 Feature: domain Description: DDE_Tnp_IS66 Location: 8996644-8996959 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8996644-8996959 bp Feature: gene Location: 8997468-8998799 bp Ori: BAC53460.1 Gene: bll8195 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8997762-8998425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8997762-8998425 bp Feature: domain Description: GIIM Note: maturase Location: 8998491-8998713 bp Feature: domain Description: GIIM Note: maturase Location: 8998491 -899871 3 bp Feature: gene Location: 8998732-8999568 bp Ori: BAC53461.1 Gene: bll8196 Feature: domain Description: LomR Location: 8998768-8999479 bp Feature: domain Description: LomR Location: 8998768-8999479 bp Feature: gene Location: 9000012-9000680 bp Ori: BAC53462.1 Gene: blr8197 Feature: domain Description: PHA02518 Location: 9000021-9000618 bp Feature: domain Description: PHA0251 8 Location: 9000021 -900061 8 bp Feature: gene Location: 9006361-9006765 bp Feature: gene Location: 9007037-9007393 bp Ori: BAC53469.1 Gene: blr8204 Feature: domain Description: COG5659 Location: 9007136-9007268 bp Feature: domain Description: COG5659 Location: 90071 36-9007268 bp Feature: gene Location: 9007492-9008250 bp Ori: BAC53470.1 Gene: bll8205 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9007510-9007873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900751 0-9007873 bp Feature: gene Location: 9008410-9008970 bp Ori: BAC53471.1 Gene: bll8206 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9008818-9008896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900881 8-9008896 bp Feature: gene Location: 9008977-9009306 bp Feature: gene Location: 9009307-9009471 bp Ori: BAC53473.1 Gene: bsl8208 Feature: domain Description: MmsB Location: 9009319-9009430 bp Feature: domain Description: MmsB Location: 900931 9-9009430 bp Feature: gene Location: 9100093-9100350 bp Ori: BAC53576.1 Gene: bsr8311 Feature: domain Description: COG5489 Location: 9100207-9100321 bp Feature: domain Description: COG5489 Location: 91 00207-91 00321 bp Feature: gene Location: 9100347-9100625 bp Ori: BAC53577.1 Gene: hupT Feature: domain Description: HU_IHF Location: 9100362-9100611 bp Feature: domain Description: HU_IHF Location: 91 00362-91 0061 1 bp Feature: gene Location: 9100622-9101206 bp Ori: BAC53578.1 Gene: bll8313 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9100958-9101177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 00958-91 01 1 77 bp Feature: gene Location: 9102081-9102275 bp Feature: gene Location: 9102787-9103083 bp Ori: BAC53580.1 Gene: bsl8315 Feature: domain Description: DUF3892 Location: 9102820-9103072 bp Feature: domain Description: DUF3892 Location: 91 02820-91 03072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12, PRK12904 (preprotein translocase subunit SecA; Reviewed), SurA_N_3 (pfam13624), SurA (COG0760), COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508)
Zn_ribbon_recom (pfam13408), group_II_RT_mat (TIGR04416), DUF4096 (pfam13340), DDE_Tnp_1_2 (pfam13586), DDE_5 (pfam13546), CoiA (pfam06054), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), PHA00617 (ribbon-helix-helix domain containing protein), GIIM (pfam08388)
HTH_Tnp_1 (pfam01527), Tra5 (COG2801), INT_RitC_C_like (cd01182), DDE_Tnp_IS66 (pfam03050), LomR (COG3637), PHA02518 (ParA-like protein; Provisional), COG5659 (SRSO17 transposase ), MmsB (COG2084), COG5489 (Uncharacterized conserved protein, DUF736 family ), HU_IHF (cl00257)
DUF3892 (pfam13031)