myRT

myRT report for GCA_000012005.1_ASM1200v1

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Seq: CP000035.1 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence (182726 bp)
Overview 1 RT 1: 27467-32524 bp 2 RT 2: 89045-93072 bp 3 RT 3: 164747-167089 bp Neighborhood of RT #1 [27467, 32524] sopB_N ParB COG3547 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [89045, 93083] PRK08943 HTH_23 InsE RVT-GII RVT-GII DDE_Tnp_1 PHA02517 Neighborhood of RT #3 [164747, 167112] Y2_Tnp RVT-GII PHA02517 PHA02517 HTH_21 Feature: gene Location: 27467-28447 bp Ori: ABB64545.1 Gene: parB Feature: domain Description: sopB_N Location: 27644-27839 bp Feature: domain Description: sopB_N Location: 27644-27839 bp Feature: domain Description: ParB Location: 28052-28427 bp Feature: domain Description: ParB Location: 28052-28427 bp Feature: gene Location: 28703-29188 bp Ori: ABB64546.1 Feature: domain Description: COG3547 Location: 28721-29174 bp Feature: domain Description: COG3547 Location: 28721 -291 74 bp Feature: gene Location: 29477-30604 bp Ori: ABB64547.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29573-30227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29573-30227 bp Feature: domain Description: GIIM Note: maturase Location: 30305-30527 bp Feature: domain Description: GIIM Note: maturase Location: 30305-30527 bp Feature: gene Location: 31384-32007 bp Ori: ABB64548.1 Feature: domain Description: PHA02517 Location: 31387-31993 bp Feature: domain Description: PHA0251 7 Location: 31 387-31 993 bp Feature: gene Location: 32204-32524 bp Feature: gene Location: 89045-89989 bp Ori: ABB64623.1 Gene: msbB2 Feature: domain Description: PRK08943 Location: 89048-89984 bp Feature: domain Description: PRK08943 Location: 89048-89984 bp Feature: gene Location: 90163-90831 bp Ori: ABB64624.1 Feature: domain Description: HTH_23 Location: 90271-90358 bp Feature: domain Description: HTH_23 Location: 90271 -90358 bp Feature: domain Description: InsE Location: 90490-90682 bp Feature: domain Description: InsE Location: 90490-90682 bp Feature: gene Location: 90973-91281 bp Ori: ABB64625.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90982-91273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90982-91 273 bp Feature: gene Location: 91342-91545 bp Ori: ABB64626.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91450-91540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 450-91 540 bp Feature: gene Location: 91637-92329 bp Ori: ABB64627.1 Feature: domain Description: DDE_Tnp_1 Location: 91643-92285 bp Feature: domain Description: DDE_Tnp_1 Location: 91 643-92285 bp Feature: gene Location: 92370-93083 bp Ori: ABB64628.1 Feature: domain Description: PHA02517 Location: 92388-93072 bp Feature: domain Description: PHA0251 7 Location: 92388-93072 bp Feature: gene Location: 164747-165148 bp Ori: ABB64717.1 Feature: domain Description: Y2_Tnp Location: 164843-165020 bp Feature: domain Description: Y2_Tnp Location: 1 64843-1 65020 bp Feature: gene Location: 165211-165468 bp Feature: gene Location: 166459-166659 bp Ori: ABB64719.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166474-166648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 66474-1 66648 bp Feature: gene Location: 166574-166816 bp Ori: ABB64720.1 Feature: domain Description: PHA02517 Location: 166610-166772 bp Feature: domain Description: PHA0251 7 Location: 1 6661 0-1 66772 bp Feature: gene Location: 166789-167112 bp Ori: ABB64721.1 Feature: domain Description: PHA02517 Location: 166792-166915 bp Feature: domain Description: PHA0251 7 Location: 1 66792-1 6691 5 bp Feature: domain Description: HTH_21 Location: 167053-167089 bp Feature: domain Description: HTH_21 Location: 1 67053-1 67089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated), HTH_23 (pfam13384), InsE (COG2963), DDE_Tnp_1 (pfam01609)
Y2_Tnp (pfam04986), HTH_21 (pfam13276)

Seq: CP000034.1 Shigella dysenteriae Sd197, complete genome (4369232 bp)
Overview 1 RT 1: 3806201-3810069 bp Neighborhood of RT #1 [3806201, 3810074] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 3806201-3806656 bp Ori: ABB63988.1 Gene: dut Feature: domain Description: dut Location: 3806204-3806651 bp Feature: domain Description: dut Location: 38062 04-3806651 bp Feature: gene Location: 3806721-3807359 bp Ori: ABB63989.1 Gene: ttk Feature: domain Description: slmA Location: 3806769-3807345 bp Feature: domain Description: slmA Location: 3806769-3807345 bp Feature: gene Location: 3807688-3808197 bp Ori: ABB63990.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3807694-3808189 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3807694-3808189 bp Feature: gene Location: 3808651-3809292 bp Ori: ABB63991.1 Gene: pyrE Feature: domain Description: pyrE Location: 3808654-3809287 bp Feature: domain Description: pyrE Location: 3808654-38092 87 bp Feature: gene Location: 3809358-3810074 bp Ori: ABB63992.1 Gene: rph Feature: domain Description: rph Location: 3809361-3810069 bp Feature: domain Description: rph Location: 3809361-3810069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)