myRT

myRT report for GCA_000012025.1_ASM1202v1

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Seq: CP000037.1 Shigella boydii Sb227 plasmid pSB4_227, complete sequence (126697 bp)
Overview 1 RT 1: 31036-39304 bp Neighborhood of RT #1 [31036, 39327] sopB_N ParB COG3547 HTH_21 RVT-GII GIIM InsE COG4453 Acetyltransf_10 RVT-GII rve COG3547 PRK15185 PRK15185 Feature: gene Location: 31036-32016 bp Ori: ABB68916.1 Gene: parB Feature: domain Description: sopB_N Location: 31213-31408 bp Feature: domain Description: sopB_N Location: 31 21 3-31 408 bp Feature: domain Description: ParB Location: 31621-31996 bp Feature: domain Description: ParB Location: 31 621 -31 996 bp Feature: gene Location: 32272-32757 bp Ori: ABB68917.1 Feature: domain Description: COG3547 Location: 32290-32743 bp Feature: domain Description: COG3547 Location: 32290-32743 bp Feature: gene Location: 33045-34091 bp Ori: ABB68918.1 Feature: domain Description: HTH_21 Location: 33141-33291 bp Feature: domain Description: HTH_21 Location: 331 41 -33291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33339-33714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33339-3371 4 bp Feature: domain Description: GIIM Note: maturase Location: 33792-34014 bp Feature: domain Description: GIIM Note: maturase Location: 33792-3401 4 bp Feature: gene Location: 34118-34420 bp Ori: ABB68919.1 Feature: domain Description: InsE Location: 34127-34409 bp Feature: domain Description: InsE Location: 341 27-34409 bp Feature: gene Location: 35093-35377 bp Ori: ABB68920.1 Feature: domain Description: COG4453 Location: 35117-35372 bp Feature: domain Description: COG4453 Location: 351 1 7-35372 bp Feature: gene Location: 35365-35850 bp Ori: ABB68921.1 Feature: domain Description: Acetyltransf_10 Location: 35500-35815 bp Feature: domain Description: Acetyltransf_1 0 Location: 35500-3581 5 bp Feature: gene Location: 35935-36855 bp Ori: ABB68922.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36031-36301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36031 -36301 bp Feature: domain Description: rve Location: 36340-36685 bp Feature: domain Description: rve Location: 36340-36685 bp Feature: gene Location: 36913-38040 bp Ori: ABB68923.1 Feature: domain Description: COG3547 Location: 37084-37903 bp Feature: domain Description: COG3547 Location: 37084-37903 bp Feature: gene Location: 38539-39327 bp Ori: ABB68924.1 Gene: virF Feature: domain Description: PRK15185 Location: 38593-38791 bp Feature: domain Description: PRK1 51 85 Location: 38593-38791 bp Feature: domain Description: PRK15185 Location: 38935-39304 bp Feature: domain Description: PRK1 51 85 Location: 38935-39304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), HTH_21 (pfam13276), RVT-GII, GIIM (pfam08388), InsE (COG2963), COG4453 (Uncharacterized conserved protein, DUF1778 family ), Acetyltransf_10 (pfam13673), rve (pfam00665)
PRK15185 (transcriptional regulator HilD; Provisional)