myRT

myRT report for GCA_000012685.1_ASM1268v1

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Seq: CP000113.1 Myxococcus xanthus DK 1622, complete genome (9139763 bp)
Overview 1 RT 1: 160655-173400 bp 2 RT 2: 2432806-2437262 bp 3 RT 3: 4206096-4212413 bp 4 RT 4: 6506745-6514641 bp 5 RT 5: 7095320-7100360 bp 6 RT 6: 7730848-7737774 bp Neighborhood of RT #1 [160655, 173471] BetA BetA BetA DAP2 RVT-Retrons WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Neighborhood of RT #2 [2432806, 2437393] DUF4150 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM Tra5 HTH_Tnp_1 HTH_Tnp_1 Neighborhood of RT #3 [4206096, 4212413] AtoC HATPase_c_3 BaeS RVT-GII GIIM Neighborhood of RT #4 [6506745, 6514691] MhpC M14_REP34-like RVT-GII GIIM EstA PIOX_like Neighborhood of RT #5 [7095320, 7100788] RNase_HI_like COG4127 RVT-Retrons COG4941 LPAM_1 Neighborhood of RT #6 [7730848, 7737953] RVT-Retrons COG3791 EpmB EpmB Feature: gene Location: 160655-162178 bp Ori: ABF93161.1 Feature: domain Description: BetA Location: 160673-161165 bp Feature: domain Description: BetA Location: 1 60673-1 61 1 65 bp Feature: domain Description: BetA Location: 161306-161609 bp Feature: domain Description: BetA Location: 1 61 306-1 61 609 bp Feature: domain Description: BetA Location: 161744-162158 bp Feature: domain Description: BetA Location: 1 61 744-1 621 58 bp Feature: gene Location: 162330-163220 bp Ori: ABF90905.1 Feature: domain Description: DAP2 Location: 162456-163038 bp Feature: domain Description: DAP2 Location: 1 62456-1 63038 bp Feature: gene Location: 163224-164681 bp Ori: ABF87722.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 163782-164424 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 63782-1 64424 bp Feature: gene Location: 165082-166935 bp Feature: gene Location: 166932-173471 bp Ori: ABF87134.1 Feature: domain Description: WD40 Location: 167094-167790 bp Feature: domain Description: WD40 Location: 1 67094-1 67790 bp Feature: domain Description: HEAT_2 Location: 168012-168195 bp Feature: domain Description: HEAT_2 Location: 1 6801 2-1 681 95 bp Feature: domain Description: HEAT_2 Location: 168777-169026 bp Feature: domain Description: HEAT_2 Location: 1 68777-1 69026 bp Feature: domain Description: HEAT_2 Location: 169071-169236 bp Feature: domain Description: HEAT_2 Location: 1 69071 -1 69236 bp Feature: domain Description: HEAT_2 Location: 169266-169497 bp Feature: domain Description: HEAT_2 Location: 1 69266-1 69497 bp Feature: domain Description: HEAT_2 Location: 169935-170088 bp Feature: domain Description: HEAT_2 Location: 1 69935-1 70088 bp Feature: domain Description: HEAT_2 Location: 170199-170358 bp Feature: domain Description: HEAT_2 Location: 1 701 99-1 70358 bp Feature: domain Description: HEAT_2 Location: 170718-170907 bp Feature: domain Description: HEAT_2 Location: 1 7071 8-1 70907 bp Feature: domain Description: HEAT_2 Location: 170952-171159 bp Feature: domain Description: HEAT_2 Location: 1 70952-1 71 1 59 bp Feature: domain Description: HEAT_2 Location: 171324-171558 bp Feature: domain Description: HEAT_2 Location: 1 71 324-1 71 558 bp Feature: domain Description: HEAT_2 Location: 172170-172386 bp Feature: domain Description: HEAT_2 Location: 1 721 70-1 72386 bp Feature: domain Description: HEAT_2 Location: 172866-173118 bp Feature: domain Description: HEAT_2 Location: 1 72866-1 731 1 8 bp Feature: domain Description: HEAT_2 Location: 173244-173400 bp Feature: domain Description: HEAT_2 Location: 1 73244-1 73400 bp Feature: gene Location: 2432806-2433192 bp Ori: ABF87362.1 Feature: domain Description: DUF4150 Location: 2432872-2433190 bp Feature: domain Description: DUF41 50 Location: 2432872-24331 90 bp Feature: gene Location: 2433450-2433800 bp Ori: ABF91039.1 Feature: domain Description: DDE_Tnp_IS66 Location: 2433486-2433609 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2433486-2433609 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2433633-2433741 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2433633-2433741 bp Feature: gene Location: 2434296-2435606 bp Ori: ABF89781.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2434581-2435199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2434581 -24351 99 bp Feature: domain Description: GIIM Note: maturase Location: 2435271-2435493 bp Feature: domain Description: GIIM Note: maturase Location: 2435271 -2435493 bp Feature: gene Location: 2435780-2436235 bp Ori: ABF92687.1 Feature: domain Description: Tra5 Location: 2435786-2436059 bp Feature: domain Description: Tra5 Location: 2435786-2436059 bp Feature: gene Location: 2436842-2437393 bp Ori: ABF85883.1 Feature: domain Description: HTH_Tnp_1 Location: 2436851-2437010 bp Feature: domain Description: HTH_Tnp_1 Location: 2436851 -243701 0 bp Feature: domain Description: HTH_Tnp_1 Location: 2437025-2437262 bp Feature: domain Description: HTH_Tnp_1 Location: 2437025-2437262 bp Feature: gene Location: 4206096-4206677 bp Ori: ABF91583.1 Feature: domain Description: AtoC Location: 4206105-4206498 bp Feature: domain Description: AtoC Location: 42061 05-4206498 bp Feature: gene Location: 4206674-4208824 bp Ori: ABF91956.1 Feature: domain Description: HATPase_c_3 Location: 4206821-4207232 bp Feature: domain Description: HATPase_c_3 Location: 4206821 -4207232 bp Feature: domain Description: BaeS Location: 4207697-4208819 bp Feature: domain Description: BaeS Location: 4207697-420881 9 bp Feature: gene Location: 4209761-4211071 bp Ori: ABF88048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4210046-4210664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421 0046-421 0664 bp Feature: domain Description: GIIM Note: maturase Location: 4210736-4210958 bp Feature: domain Description: GIIM Note: maturase Location: 421 0736-421 0958 bp Feature: gene Location: 4211670-4211951 bp Feature: gene Location: 4211958-4212413 bp Feature: gene Location: 6506745-6507902 bp Ori: ABF87679.1 Feature: domain Description: MhpC Location: 6506934-6507822 bp Feature: domain Description: MhpC Location: 6506934-6507822 bp Feature: gene Location: 6508061-6508978 bp Ori: ABF92825.1 Feature: domain Description: M14_REP34-like Location: 6508160-6508958 bp Feature: domain Description: M1 4_REP34-like Location: 65081 60-6508958 bp Feature: gene Location: 6509288-6510598 bp Ori: ABF86578.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6509573-6510191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6509573-651 01 91 bp Feature: domain Description: GIIM Note: maturase Location: 6510263-6510485 bp Feature: domain Description: GIIM Note: maturase Location: 651 0263-651 0485 bp Feature: gene Location: 6511094-6512530 bp Ori: ABF87591.1 Feature: domain Description: EstA Location: 6511271-6511661 bp Feature: domain Description: EstA Location: 651 1 271 -651 1 661 bp Feature: gene Location: 6512697-6514691 bp Ori: ABF88938.1 Feature: domain Description: PIOX_like Location: 6513024-6514641 bp Feature: domain Description: PIOX_like Location: 651 3024-651 4641 bp Feature: gene Location: 7095320-7095763 bp Ori: ABF85946.1 Gene: rnhA Feature: domain Description: RNase_HI_like Location: 7095374-7095752 bp Feature: domain Description: RNase_HI_like Location: 7095374-7095752 bp Feature: gene Location: 7095794-7096816 bp Ori: ABF86946.1 Feature: domain Description: COG4127 Location: 7095815-7096802 bp Feature: domain Description: COG41 27 Location: 709581 5-7096802 bp Feature: gene Location: 7096833-7097879 bp Ori: ABF86969.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7096995-7097649 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7096995-7097649 bp Feature: gene Location: 7098446-7099726 bp Ori: ABF92297.1 Feature: domain Description: COG4941 Location: 7098470-7099706 bp Feature: domain Description: COG4941 Location: 7098470-7099706 bp Feature: gene Location: 7100282-7100788 bp Ori: ABF89945.1 Feature: domain Description: LPAM_1 Location: 7100309-7100360 bp Feature: domain Description: LPAM_1 Location: 71 00309-71 00360 bp Feature: gene Location: 7730848-7732758 bp Feature: gene Location: 7732755-7734353 bp Feature: gene Location: 7734532-7735815 bp Ori: ABF87021.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7734997-7735600 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7734997-7735600 bp Feature: gene Location: 7735824-7736243 bp Ori: ABF86264.1 Feature: domain Description: COG3791 Location: 7735851-7736205 bp Feature: domain Description: COG3791 Location: 7735851 -7736205 bp Feature: gene Location: 7736625-7737953 bp Ori: ABF88696.1 Feature: domain Description: EpmB Location: 7736688-7736874 bp Feature: domain Description: EpmB Location: 7736688-7736874 bp Feature: domain Description: EpmB Location: 7737018-7737774 bp Feature: domain Description: EpmB Location: 773701 8-7737774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BetA (COG2303), DAP2 (COG1506), RVT-Retrons, WD40 (smart00320), HEAT_2 (pfam13646), DUF4150 (pfam13665), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)
Tra5 (COG2801), HTH_Tnp_1 (pfam01527), AtoC (COG2204), HATPase_c_3 (pfam13589), BaeS (COG0642), MhpC (COG0596), M14_REP34-like (cd06231), EstA (COG1075), PIOX_like (cd09818), RNase_HI_like (cd09279)
COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), LPAM_1 (pfam08139), COG3791 (Uncharacterized conserved protein ), EpmB (COG1509)