myRT

myRT report for GCA_000012885.1_ASM1288v1

Download annotations/find similar RTs

Seq: CP000142.2 Pelobacter carbinolicus DSM 2380, complete genome (3665893 bp)
Overview 1 RT 1: 991524-996480 bp 2 RT 2: 1537224-1542375 bp 3 RT 3: 1558226-1564454 bp 4 RT 4: 1604898-1614416 bp 5 RT 5: 2648569-2653327 bp Neighborhood of RT #1 [991524, 997106] FieF NifX DUF5320 RVT-GII GIIM GIT_CC DUF4405 Neighborhood of RT #2 [1537224, 1542419] Ferritin_like_AB Ferritin_like_AB RVT-GII GIIM COG5495 Glyco_hydro_3 Neighborhood of RT #3 [1558226, 1564492] tpiA secG RVT-GII GIIM sCache_3_3 Tar Tar Neighborhood of RT #4 [1604898, 1614430] SPOR Spr Tar Tar HC2 RVT-GII GIIM SbcD SbcC SbcC Neighborhood of RT #5 [2648569, 2653389] GT2_RfbC_Mx_like RVT-GII GIIM Alginate_exp Alginate_exp Feature: gene Location: 991524-992810 bp Ori: ABA88095.1 Feature: domain Description: FieF Location: 991554-992427 bp Feature: domain Description: FieF Location: 991 554-992427 bp Feature: domain Description: NifX Location: 992430-992787 bp Feature: domain Description: NifX Location: 992430-992787 bp Feature: gene Location: 992961-993272 bp Ori: ABA88096.1 Feature: domain Description: DUF5320 Location: 992964-993249 bp Feature: domain Description: DUF5320 Location: 992964-993249 bp Feature: gene Location: 993608-995197 bp Ori: ABA88097.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994133-994751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9941 33-994751 bp Feature: domain Description: GIIM Note: maturase Location: 994799-995030 bp Feature: domain Description: GIIM Note: maturase Location: 994799-995030 bp Feature: gene Location: 995430-996194 bp Ori: ABA88098.1 Feature: domain Description: GIT_CC Location: 995484-995601 bp Feature: domain Description: GIT_CC Location: 995484-995601 bp Feature: gene Location: 996270-997106 bp Ori: ABA88099.1 Feature: domain Description: DUF4405 Location: 996285-996480 bp Feature: domain Description: DUF4405 Location: 996285-996480 bp Feature: gene Location: 1537224-1537724 bp Ori: ABA88563.1 Feature: domain Description: Ferritin_like_AB Location: 1537257-1537686 bp Feature: domain Description: Ferritin_like_AB Location: 1 537257-1 537686 bp Feature: gene Location: 1537802-1538317 bp Ori: ABA88564.1 Feature: domain Description: Ferritin_like_AB Location: 1537808-1538225 bp Feature: domain Description: Ferritin_like_AB Location: 1 537808-1 538225 bp Feature: gene Location: 1538671-1540260 bp Ori: ABA88565.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539196-1539814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5391 96-1 53981 4 bp Feature: domain Description: GIIM Note: maturase Location: 1539862-1540093 bp Feature: domain Description: GIIM Note: maturase Location: 1 539862-1 540093 bp Feature: gene Location: 1540387-1541274 bp Ori: ABA88566.1 Feature: domain Description: COG5495 Location: 1540405-1541224 bp Feature: domain Description: COG5495 Location: 1 540405-1 541 224 bp Feature: gene Location: 1541271-1542419 bp Ori: ABA88567.1 Feature: domain Description: Glyco_hydro_3 Location: 1541394-1542375 bp Feature: domain Description: Glyco_hydro_3 Location: 1 541 394-1 542375 bp Feature: gene Location: 1558226-1558984 bp Ori: ABA88582.1 Gene: tpi Feature: domain Description: tpiA Location: 1558232-1558973 bp Feature: domain Description: tpiA Location: 1 558232-1 558973 bp Feature: gene Location: 1559128-1559481 bp Ori: ABA88583.1 Gene: secG Feature: domain Description: secG Location: 1559137-1559347 bp Feature: domain Description: secG Location: 1 5591 37-1 559347 bp Feature: gene Location: 1559958-1561547 bp Ori: ABA88584.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1560483-1561101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 560483-1 561 1 01 bp Feature: domain Description: GIIM Note: maturase Location: 1561149-1561380 bp Feature: domain Description: GIIM Note: maturase Location: 1 561 1 49-1 561 380 bp Feature: gene Location: 1562035-1562226 bp Feature: gene Location: 1562270-1564492 bp Ori: ABA88585.1 Gene: mcp36H-6 Feature: domain Description: sCache_3_3 Location: 1562660-1562993 bp Feature: domain Description: sCache_3_3 Location: 1 562660-1 562993 bp Feature: domain Description: Tar Location: 1563281-1563593 bp Feature: domain Description: Tar Location: 1 563281 -1 563593 bp Feature: domain Description: Tar Location: 1563599-1564454 bp Feature: domain Description: Tar Location: 1 563599-1 564454 bp Feature: gene Location: 1604898-1605719 bp Ori: ABA88618.1 Feature: domain Description: SPOR Location: 1605087-1605291 bp Feature: domain Description: SPOR Location: 1 605087-1 605291 bp Feature: domain Description: Spr Location: 1605330-1605708 bp Feature: domain Description: Spr Location: 1 605330-1 605708 bp Feature: gene Location: 1606189-1608309 bp Ori: ABA88619.1 Gene: mcp36H-8 Feature: domain Description: Tar Location: 1606594-1606966 bp Feature: domain Description: Tar Location: 1 606594-1 606966 bp Feature: domain Description: Tar Location: 1606972-1607827 bp Feature: domain Description: Tar Location: 1 606972-1 607827 bp Feature: domain Description: HC2 Location: 1607941-1608241 bp Feature: domain Description: HC2 Location: 1 607941 -1 608241 bp Feature: gene Location: 1608644-1610233 bp Ori: ABA88620.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1609169-1609787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6091 69-1 609787 bp Feature: domain Description: GIIM Note: maturase Location: 1609835-1610066 bp Feature: domain Description: GIIM Note: maturase Location: 1 609835-1 61 0066 bp Feature: gene Location: 1610468-1611733 bp Ori: ABA88621.1 Gene: sbcD-2 Feature: domain Description: SbcD Location: 1610477-1611515 bp Feature: domain Description: SbcD Location: 1 61 0477-1 61 1 51 5 bp Feature: gene Location: 1611986-1614430 bp Ori: ABA88622.1 Gene: sbcC-2 Feature: domain Description: SbcC Location: 1611998-1613168 bp Feature: domain Description: SbcC Location: 1 61 1 998-1 61 31 68 bp Feature: domain Description: SbcC Location: 1613300-1614416 bp Feature: domain Description: SbcC Location: 1 61 3300-1 61 441 6 bp Feature: gene Location: 2648569-2649309 bp Ori: ABA89506.1 Feature: domain Description: GT2_RfbC_Mx_like Location: 2648746-2649049 bp Feature: domain Description: GT2_RfbC_Mx_like Location: 2648746-2649049 bp Feature: gene Location: 2649306-2649557 bp Feature: gene Location: 2649707-2651047 bp Ori: ABA89508.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2649995-2650658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2649995-2650658 bp Feature: domain Description: GIIM Note: maturase Location: 2650733-2650937 bp Feature: domain Description: GIIM Note: maturase Location: 2650733-2650937 bp Feature: gene Location: 2651135-2651452 bp Feature: gene Location: 2651968-2653389 bp Ori: ABA89510.1 Feature: domain Description: Alginate_exp Location: 2652760-2653015 bp Feature: domain Description: Alginate_exp Location: 2652760-265301 5 bp Feature: domain Description: Alginate_exp Location: 2653195-2653327 bp Feature: domain Description: Alginate_exp Location: 26531 95-2653327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FieF (COG0053), NifX (COG1433), DUF5320 (pfam17253), RVT-GII, GIIM (pfam08388), GIT_CC (pfam16559), DUF4405 (pfam14358), Ferritin_like_AB (cd01045), COG5495 (Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains ), Glyco_hydro_3 (pfam00933)
tpiA (PRK00042), secG (TIGR00810), sCache_3_3 (pfam17202), Tar (COG0840), SPOR (pfam05036), Spr (COG0791), HC2 (pfam07382), SbcD (COG0420), SbcC (COG0419), GT2_RfbC_Mx_like (cd04184)
Alginate_exp (pfam13372)