myRT

myRT report for GCA_000012985.1_ASM1298v1

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Seq: CP000155.1 Hahella chejuensis KCTC 2396, complete genome (7215267 bp)
Overview 1 RT 1: 95629-102600 bp 2 RT 2: 1911778-1917585 bp 3 RT 3: 2176649-2181210 bp 4 RT 4: 4094981-4103483 bp 5 RT 5: 4683364-4688591 bp 6 RT 6: 5340126-5346986 bp 7 RT 7: 6842729-6848134 bp 8 RT 8: 6857613-6862143 bp Neighborhood of RT #1 [95629, 102665] marine_srt_targ marine_sortase RVT-GII GIIM Big_9 Autotransporter Neighborhood of RT #2 [1911778, 1917585] PRK05657 Chalcone_3 RVT-GII GIIM TPR_1 Smc Neighborhood of RT #3 [2176649, 2181218] CC3_like_SDR_a PRK09372 RVT-GII GIIM PilZ SH3_and_anchor Neighborhood of RT #4 [4094981, 4103483] RVT_N RVT-GII GIIM HNHc RVT-Retrons Neighborhood of RT #5 [4683364, 4688591] GTA_holin_3TM L-Ala-D-Glu_peptidase_like RVT-GII GIIM Neighborhood of RT #6 [5340126, 5347006] AtoC PRK11360 RVT-GII GIIM AtoC FliT Neighborhood of RT #7 [6842729, 6848229] GstA YafY RVT-GII GIIM LNS2 Neighborhood of RT #8 [6857613, 6862217] TerB DUF393 RVT-Retrons PBP2_HisK MFS_NepI_like Feature: gene Location: 95629-97830 bp Ori: ABC27010.1 Feature: domain Description: marine_srt_targ Location: 95830-97690 bp Feature: domain Description: marine_srt_targ Location: 95830-97690 bp Feature: gene Location: 97827-98450 bp Ori: ABC27011.1 Feature: domain Description: marine_sortase Location: 97866-98418 bp Feature: domain Description: marine_sortase Location: 97866-9841 8 bp Feature: gene Location: 99187-100575 bp Ori: ABC27012.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99511-100129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9951 1 -1 001 29 bp Feature: domain Description: GIIM Note: maturase Location: 100180-100408 bp Feature: domain Description: GIIM Note: maturase Location: 1 001 80-1 00408 bp Feature: gene Location: 100700-100876 bp Feature: gene Location: 101058-102665 bp Ori: ABC27014.1 Feature: domain Description: Big_9 Location: 101157-101385 bp Feature: domain Description: Big_9 Location: 1 01 1 57-1 01 385 bp Feature: domain Description: Autotransporter Location: 101826-102600 bp Feature: domain Description: Autotransporter Location: 1 01 826-1 02600 bp Feature: gene Location: 1911778-1912776 bp Ori: ABC28714.1 Gene: rpoS Feature: domain Description: PRK05657 Location: 1911853-1912771 bp Feature: domain Description: PRK05657 Location: 1 91 1 853-1 91 2771 bp Feature: gene Location: 1913035-1913601 bp Ori: ABC28715.1 Feature: domain Description: Chalcone_3 Location: 1913095-1913593 bp Feature: domain Description: Chalcone_3 Location: 1 91 3095-1 91 3593 bp Feature: gene Location: 1914153-1915541 bp Ori: ABC28716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1914477-1915095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 4477-1 91 5095 bp Feature: domain Description: GIIM Note: maturase Location: 1915146-1915374 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 51 46-1 91 5374 bp Feature: gene Location: 1915811-1917220 bp Ori: ABC28717.1 Feature: domain Description: TPR_1 Location: 1915904-1915982 bp Feature: domain Description: TPR_1 Location: 1 91 5904-1 91 5982 bp Feature: domain Description: Smc Location: 1916438-1916720 bp Feature: domain Description: Smc Location: 1 91 6438-1 91 6720 bp Feature: gene Location: 1917331-1917585 bp Feature: gene Location: 2176649-2177323 bp Ori: ABC28953.1 Feature: domain Description: CC3_like_SDR_a Location: 2176667-2177264 bp Feature: domain Description: CC3_like_SDR_a Location: 21 76667-21 77264 bp Feature: gene Location: 2177415-2177909 bp Ori: ABC28954.1 Gene: menG Feature: domain Description: PRK09372 Location: 2177421-2177889 bp Feature: domain Description: PRK09372 Location: 21 77421 -21 77889 bp Feature: gene Location: 2177993-2179381 bp Ori: ABC28955.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2178317-2178935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 7831 7-21 78935 bp Feature: domain Description: GIIM Note: maturase Location: 2178986-2179214 bp Feature: domain Description: GIIM Note: maturase Location: 21 78986-21 7921 4 bp Feature: gene Location: 2179883-2180224 bp Ori: ABC28956.1 Feature: domain Description: PilZ Location: 2179946-2180210 bp Feature: domain Description: PilZ Location: 21 79946-21 8021 0 bp Feature: gene Location: 2180559-2181218 bp Ori: ABC28957.1 Feature: domain Description: SH3_and_anchor Location: 2180628-2181210 bp Feature: domain Description: SH3_and_anchor Location: 21 80628-21 81 21 0 bp Feature: gene Location: 4094981-4095211 bp Feature: gene Location: 4095554-4095667 bp Feature: gene Location: 4096391-4098097 bp Ori: ABC30675.1 Feature: domain Description: RVT_N Location: 4096448-4096691 bp Feature: domain Description: RVT_N Location: 4096448-4096691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4096736-4097381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4096736-4097381 bp Feature: domain Description: GIIM Note: maturase Location: 4097435-4097666 bp Feature: domain Description: GIIM Note: maturase Location: 4097435-4097666 bp Feature: domain Description: HNHc Note: nucleases Location: 4097894-4098041 bp Feature: domain Description: HNHc Note: nucleases Location: 4097894-4098041 bp Feature: gene Location: 4098254-4099312 bp Feature: gene Location: 4099593-4101356 bp Ori: ABC30677.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4100142-4100763 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 001 42-41 00763 bp Feature: gene Location: 4101428-4101562 bp Feature: gene Location: 4101810-4103483 bp Feature: gene Location: 4683364-4683834 bp Ori: ABC31265.1 Feature: domain Description: GTA_holin_3TM Location: 4683460-4683700 bp Feature: domain Description: GTA_holin_3TM Location: 4683460-4683700 bp Feature: gene Location: 4683765-4684148 bp Ori: ABC31266.1 Feature: domain Description: L-Ala-D-Glu_peptidase_like Location: 4683795-4684128 bp Feature: domain Description: L-Ala-D-Glu_peptidase_like Location: 4683795-46841 28 bp Feature: gene Location: 4684237-4685625 bp Ori: ABC31267.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4684561-4685179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4684561 -46851 79 bp Feature: domain Description: GIIM Note: maturase Location: 4685230-4685458 bp Feature: domain Description: GIIM Note: maturase Location: 4685230-4685458 bp Feature: gene Location: 4686268-4686765 bp Feature: gene Location: 4688175-4688591 bp Feature: gene Location: 5340126-5341529 bp Ori: ABC31873.1 Feature: domain Description: AtoC Location: 5340135-5341485 bp Feature: domain Description: AtoC Location: 53401 35-5341 485 bp Feature: gene Location: 5341557-5342888 bp Ori: ABC31874.1 Feature: domain Description: PRK11360 Location: 5341779-5342880 bp Feature: domain Description: PRK1 1 360 Location: 5341 779-5342880 bp Feature: gene Location: 5343129-5344517 bp Ori: ABC31875.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5343453-5344071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5343453-5344071 bp Feature: domain Description: GIIM Note: maturase Location: 5344122-5344350 bp Feature: domain Description: GIIM Note: maturase Location: 53441 22-5344350 bp Feature: gene Location: 5345052-5346491 bp Ori: ABC31876.1 Gene: fleQ Feature: domain Description: AtoC Location: 5345064-5346483 bp Feature: domain Description: AtoC Location: 5345064-5346483 bp Feature: gene Location: 5346713-5347006 bp Ori: ABC31877.1 Feature: domain Description: FliT Location: 5346752-5346986 bp Feature: domain Description: FliT Location: 5346752-5346986 bp Feature: gene Location: 6842729-6843382 bp Ori: ABC33351.1 Feature: domain Description: GstA Location: 6842756-6843326 bp Feature: domain Description: GstA Location: 6842756-6843326 bp Feature: gene Location: 6843486-6844457 bp Ori: ABC33352.1 Feature: domain Description: YafY Location: 6843489-6844446 bp Feature: domain Description: YafY Location: 6843489-6844446 bp Feature: gene Location: 6844584-6845972 bp Ori: ABC33353.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6844908-6845526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6844908-6845526 bp Feature: domain Description: GIIM Note: maturase Location: 6845577-6845805 bp Feature: domain Description: GIIM Note: maturase Location: 6845577-6845805 bp Feature: gene Location: 6846501-6846818 bp Feature: gene Location: 6847246-6848229 bp Ori: ABC33355.1 Feature: domain Description: LNS2 Location: 6847723-6848134 bp Feature: domain Description: LNS2 Location: 6847723-68481 34 bp Feature: gene Location: 6857613-6858062 bp Ori: ABC33365.1 Feature: domain Description: TerB Location: 6857631-6858042 bp Feature: domain Description: TerB Location: 6857631 -6858042 bp Feature: gene Location: 6858083-6858448 bp Ori: ABC33366.1 Feature: domain Description: DUF393 Location: 6858107-6858440 bp Feature: domain Description: DUF393 Location: 68581 07-6858440 bp Feature: gene Location: 6858465-6859799 bp Ori: ABC33367.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6858927-6859557 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6858927-6859557 bp Feature: gene Location: 6860071-6860946 bp Ori: ABC33368.1 Feature: domain Description: PBP2_HisK Location: 6860263-6860794 bp Feature: domain Description: PBP2_HisK Location: 6860263-6860794 bp Feature: gene Location: 6861012-6862217 bp Ori: ABC33369.1 Feature: domain Description: MFS_NepI_like Location: 6861054-6862143 bp Feature: domain Description: MFS_NepI_like Location: 6861 054-68621 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT marine_srt_targ (TIGR03788), marine_sortase (TIGR03784), RVT-GII, GIIM (pfam08388), Big_9 (pfam17963), Autotransporter (smart00869), PRK05657 (RNA polymerase sigma factor RpoS; Validated), Chalcone_3 (pfam16036), TPR_1 (pfam00515), Smc (COG1196)
CC3_like_SDR_a (cd05250), PRK09372 (ribonuclease E inhibitor RraA), PilZ (pfam07238), SH3_and_anchor (TIGR04211), RVT_N (pfam13655), HNHc (smart00507), RVT-Retrons, GTA_holin_3TM (pfam11351), L-Ala-D-Glu_peptidase_like (cd14845), AtoC (COG2204)
PRK11360 (two-component system sensor histidine kinase AtoS), FliT (pfam05400), GstA (COG0625), YafY (COG2378), LNS2 (smart00775), TerB (pfam05099), DUF393 (pfam04134), PBP2_HisK (cd13704), MFS_NepI_like (cd17324)