myRT

myRT report for GCA_000013065.1_ASM1306v1

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Seq: CP000228.1 Bacillus cereus Q1 plasmid pBc239, complete sequence (239246 bp)
Overview 1 RT 1: 5634-9924 bp 2 RT 2: 123824-137501 bp 3 RT 3: 226888-234120 bp Neighborhood of RT #1 [5634, 9924] E1_enzyme_family RVT-GII Intron_maturas2 HNHc PRTRC_ThiF Neighborhood of RT #2 [123824, 137501] RVT_N RVT-GII GIIM HNH RVT_N RVT-GII HNHc DEXDc MTS RVT-GII HNHc Neighborhood of RT #3 [226888, 234173] RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma DUF3796 Feature: gene Location: 5634-6035 bp Feature: gene Location: 6048-6230 bp Ori: ACM15744.1 Feature: domain Description: E1_enzyme_family Location: 6096-6216 bp Feature: domain Description: E1 _enzyme_family Location: 6096-621 6 bp Feature: gene Location: 6856-8739 bp Ori: ACM15745.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7129-7966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 29-7966 bp Feature: domain Description: Intron_maturas2 Location: 8098-8413 bp Feature: domain Description: Intron_maturas2 Location: 8098-841 3 bp Feature: domain Description: HNHc Note: nucleases Location: 8533-8686 bp Feature: domain Description: HNHc Note: nucleases Location: 8533-8686 bp Feature: gene Location: 9087-9533 bp Ori: ACM15746.1 Feature: domain Description: PRTRC_ThiF Location: 9228-9513 bp Feature: domain Description: PRTRC_ThiF Location: 9228-951 3 bp Feature: gene Location: 9553-9924 bp Feature: gene Location: 123824-124537 bp Feature: gene Location: 124554-125090 bp Feature: gene Location: 125378-127189 bp Ori: ACM15853.1 Feature: domain Description: RVT_N Location: 125432-125678 bp Feature: domain Description: RVT_N Location: 1 25432-1 25678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125732-126386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25732-1 26386 bp Feature: domain Description: GIIM Note: maturase Location: 126449-126683 bp Feature: domain Description: GIIM Note: maturase Location: 1 26449-1 26683 bp Feature: domain Description: HNH Note: nucleases Location: 126923-127058 bp Feature: domain Description: HNH Note: nucleases Location: 1 26923-1 27058 bp Feature: gene Location: 127761-128732 bp Feature: gene Location: 128793-130592 bp Ori: ACM15855.1 Feature: domain Description: RVT_N Location: 128856-129003 bp Feature: domain Description: RVT_N Location: 1 28856-1 29003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129096-129795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 29096-1 29795 bp Feature: domain Description: HNHc Note: nucleases Location: 130323-130473 bp Feature: domain Description: HNHc Note: nucleases Location: 1 30323-1 30473 bp Feature: gene Location: 131293-132972 bp Ori: ACM15856.1 Feature: domain Description: DEXDc Location: 132073-132946 bp Feature: domain Description: DEXDc Location: 1 32073-1 32946 bp Feature: gene Location: 133044-133271 bp Feature: gene Location: 133287-134408 bp Ori: ACM15858.1 Feature: domain Description: MTS Location: 133383-133746 bp Feature: domain Description: MTS Location: 1 33383-1 33746 bp Feature: gene Location: 134553-136481 bp Ori: ACM15859.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134874-135609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34874-1 35609 bp Feature: domain Description: HNHc Note: nucleases Location: 136200-136365 bp Feature: domain Description: HNHc Note: nucleases Location: 1 36200-1 36365 bp Feature: gene Location: 136565-136678 bp Feature: gene Location: 137364-137501 bp Feature: gene Location: 226888-227271 bp Feature: gene Location: 227289-228968 bp Feature: gene Location: 229642-231516 bp Ori: ACM15953.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229942-230647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229942-230647 bp Feature: domain Description: GIIM Note: maturase Location: 230776-230929 bp Feature: domain Description: GIIM Note: maturase Location: 230776-230929 bp Feature: gene Location: 231749-233551 bp Ori: ACM15954.1 Feature: domain Description: TraG-D_C Location: 231761-232079 bp Feature: domain Description: TraG-D_C Location: 231 761 -232079 bp Feature: domain Description: Ftsk_gamma Location: 232487-232664 bp Feature: domain Description: Ftsk_gamma Location: 232487-232664 bp Feature: domain Description: Ftsk_gamma Location: 232796-232931 bp Feature: domain Description: Ftsk_gamma Location: 232796-232931 bp Feature: gene Location: 233793-234173 bp Ori: ACM15955.1 Feature: domain Description: DUF3796 Location: 233802-234120 bp Feature: domain Description: DUF3796 Location: 233802-2341 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT E1_enzyme_family (cl22428), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRTRC_ThiF (TIGR03736), RVT_N (pfam13655), GIIM (pfam08388), HNH (pfam01844), DEXDc (smart00487), MTS (pfam05175)
TraG-D_C (pfam12696), Ftsk_gamma (smart00843), DUF3796 (pfam12676)

Seq: CP000227.1 Bacillus cereus Q1, complete genome (5214195 bp)
Overview 1 RT 1: 2101738-2107612 bp 2 RT 2: 3406257-3418590 bp Neighborhood of RT #1 [2101738, 2107623] RnaY Uup RVT-GII Intron_maturas2 HNHc Uup ABC_tran_CTD BaxI_1 Neighborhood of RT #2 [3406257, 3418625] B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat RVT-GII HNHc B_ant_repeat B_ant_repeat B_ant_repeat CcdC Feature: gene Location: 2101738-2102385 bp Ori: ACM12561.1 Feature: domain Description: RnaY Location: 2101744-2102377 bp Feature: domain Description: RnaY Location: 2 101744-2 102 377 bp Feature: gene Location: 2102382-2102960 bp Ori: ACM12562.1 Feature: domain Description: Uup Location: 2102385-2102949 bp Feature: domain Description: Uup Location: 2 102 385-2 102 949 bp Feature: gene Location: 2103544-2105367 bp Ori: ACM12563.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2103820-2104651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 10382 0-2 104651 bp Feature: domain Description: Intron_maturas2 Location: 2104723-2105104 bp Feature: domain Description: Intron_maturas2 Location: 2 10472 3-2 105104 bp Feature: domain Description: HNHc Note: nucleases Location: 2105164-2105338 bp Feature: domain Description: HNHc Note: nucleases Location: 2 105164-2 105338 bp Feature: gene Location: 2105581-2106816 bp Ori: ACM12564.1 Feature: domain Description: Uup Location: 2105584-2106514 bp Feature: domain Description: Uup Location: 2 105584-2 106514 bp Feature: domain Description: ABC_tran_CTD Location: 2106598-2106793 bp Feature: domain Description: ABC_tran_CTD Location: 2 106598-2 106793 bp Feature: gene Location: 2106892-2107623 bp Ori: ACM12565.1 Feature: domain Description: BaxI_1 Location: 2106907-2107612 bp Feature: domain Description: BaxI_1 Location: 2 106907-2 107612 bp Feature: gene Location: 3406257-3407336 bp Feature: gene Location: 3407605-3413976 bp Ori: ACM13889.1 Feature: domain Description: B_ant_repeat Location: 3407614-3407752 bp Feature: domain Description: B_ant_repeat Location: 3407614-3407752 bp Feature: domain Description: B_ant_repeat Location: 3407989-3408142 bp Feature: domain Description: B_ant_repeat Location: 3407989-3408142 bp Feature: domain Description: B_ant_repeat Location: 3408379-3408532 bp Feature: domain Description: B_ant_repeat Location: 3408379-3408532 bp Feature: domain Description: B_ant_repeat Location: 3408772-3408925 bp Feature: domain Description: B_ant_repeat Location: 3408772 -340892 5 bp Feature: domain Description: B_ant_repeat Location: 3409174-3409330 bp Feature: domain Description: B_ant_repeat Location: 3409174-3409330 bp Feature: domain Description: B_ant_repeat Location: 3409570-3409726 bp Feature: domain Description: B_ant_repeat Location: 3409570-340972 6 bp Feature: domain Description: B_ant_repeat Location: 3409966-3410122 bp Feature: domain Description: B_ant_repeat Location: 3409966-341012 2 bp Feature: domain Description: B_ant_repeat Location: 3410362-3410515 bp Feature: domain Description: B_ant_repeat Location: 3410362 -3410515 bp Feature: domain Description: B_ant_repeat Location: 3410758-3410914 bp Feature: domain Description: B_ant_repeat Location: 3410758-3410914 bp Feature: domain Description: B_ant_repeat Location: 3411154-3411310 bp Feature: domain Description: B_ant_repeat Location: 3411154-3411310 bp Feature: domain Description: B_ant_repeat Location: 3411550-3411706 bp Feature: domain Description: B_ant_repeat Location: 3411550-3411706 bp Feature: domain Description: B_ant_repeat Location: 3411946-3412099 bp Feature: domain Description: B_ant_repeat Location: 3411946-3412 099 bp Feature: domain Description: B_ant_repeat Location: 3412342-3412498 bp Feature: domain Description: B_ant_repeat Location: 3412 342 -3412 498 bp Feature: domain Description: B_ant_repeat Location: 3412738-3412891 bp Feature: domain Description: B_ant_repeat Location: 3412 738-3412 891 bp Feature: domain Description: B_ant_repeat Location: 3413134-3413290 bp Feature: domain Description: B_ant_repeat Location: 3413134-34132 90 bp Feature: domain Description: B_ant_repeat Location: 3413530-3413686 bp Feature: domain Description: B_ant_repeat Location: 3413530-3413686 bp Feature: gene Location: 3414145-3416073 bp Ori: ACM13890.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3414466-3415201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3414466-34152 01 bp Feature: domain Description: HNHc Note: nucleases Location: 3415792-3415957 bp Feature: domain Description: HNHc Note: nucleases Location: 3415792 -3415957 bp Feature: gene Location: 3416766-3418055 bp Ori: ACM13891.1 Feature: domain Description: B_ant_repeat Location: 3416853-3416964 bp Feature: domain Description: B_ant_repeat Location: 3416853-3416964 bp Feature: domain Description: B_ant_repeat Location: 3417204-3417360 bp Feature: domain Description: B_ant_repeat Location: 34172 04-3417360 bp Feature: domain Description: B_ant_repeat Location: 3417603-3417759 bp Feature: domain Description: B_ant_repeat Location: 3417603-3417759 bp Feature: gene Location: 3418119-3418625 bp Ori: ACM13892.1 Gene: ccdC Feature: domain Description: CcdC Location: 3418128-3418590 bp Feature: domain Description: CcdC Location: 341812 8-3418590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RnaY (COG1418), Uup (COG0488), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ABC_tran_CTD (pfam16326), BaxI_1 (pfam12811), B_ant_repeat (TIGR01451), CcdC (COG4846)