myRT

myRT report for GCA_000013345.1_ASM1334v1

Download annotations/find similar RTs

Seq: CP000249.1 Frankia casuarinae strain CcI3 chromosome, complete genome (5433628 bp)
Overview 1 RT 1: 1188603-1195775 bp 2 RT 2: 2566960-2572420 bp 3 RT 3: 2694933-2700347 bp 4 RT 4: 3014471-3018420 bp 5 RT 5: 4463431-4466293 bp 6 RT 6: 5034097-5039198 bp Neighborhood of RT #1 [1188603, 1195783] crot-CoA-red PRK07819 PRK07819 RVT-GII GIIM FldA Methyltransf_19 Neighborhood of RT #2 [2566960, 2572446] RVT-GII GIIM PIN_MtVapC27-VapC40_like KOG2565 Neighborhood of RT #3 [2694933, 2700347] DUF664 DEDD_Tnp_IS110 RVT-GII Neighborhood of RT #4 [3014471, 3018425] Resolvase Recombinase Zn_ribbon_recom DDE_Tnp_4 RVT-GII GIIM PRK11409 YoeB_toxin Neighborhood of RT #5 [4463431, 4466388] CheY Methyltransf_25 RVT-GII GIIM Neighborhood of RT #6 [5034097, 5039198] DDE_Tnp_4 DDE_Tnp_1_assoc DDE_Tnp_1 RVT-GII GIIM DDE_Tnp_1_assoc DDE_Tnp_1 Feature: gene Location: 1188603-1189940 bp Ori: ABD10382.1 Feature: domain Description: crot-CoA-red Location: 1188699-1189887 bp Feature: domain Description: crot-CoA-red Location: 1 1 88699-1 1 89887 bp Feature: gene Location: 1189981-1191759 bp Ori: ABD10383.1 Feature: domain Description: PRK07819 Location: 1190005-1190839 bp Feature: domain Description: PRK0781 9 Location: 1 1 90005-1 1 90839 bp Feature: domain Description: PRK07819 Location: 1190920-1191757 bp Feature: domain Description: PRK0781 9 Location: 1 1 90920-1 1 91 757 bp Feature: gene Location: 1193070-1193825 bp Ori: ABD10384.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1193163-1193445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 931 63-1 1 93445 bp Feature: domain Description: GIIM Note: maturase Location: 1193526-1193730 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 93526-1 1 93730 bp Feature: gene Location: 1193910-1194464 bp Ori: ABD10385.1 Feature: domain Description: FldA Location: 1193913-1194093 bp Feature: domain Description: FldA Location: 1 1 9391 3-1 1 94093 bp Feature: gene Location: 1194959-1195783 bp Ori: ABD10386.1 Feature: domain Description: Methyltransf_19 Location: 1194992-1195775 bp Feature: domain Description: Methyltransf_1 9 Location: 1 1 94992-1 1 95775 bp Feature: gene Location: 2566960-2567334 bp Feature: gene Location: 2567328-2568473 bp Feature: gene Location: 2569242-2570618 bp Ori: ABD11566.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2569557-2570187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2569557-25701 87 bp Feature: domain Description: GIIM Note: maturase Location: 2570274-2570478 bp Feature: domain Description: GIIM Note: maturase Location: 2570274-2570478 bp Feature: gene Location: 2570787-2570999 bp Ori: ABD11567.1 Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 2570862-2570982 bp Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 2570862-2570982 bp Feature: gene Location: 2571187-2572446 bp Ori: ABD11568.1 Feature: domain Description: KOG2565 Location: 2571244-2572420 bp Feature: domain Description: KOG2565 Location: 2571 244-2572420 bp Feature: gene Location: 2694933-2695460 bp Ori: ABD11684.1 Feature: domain Description: DUF664 Location: 2695005-2695440 bp Feature: domain Description: DUF664 Location: 2695005-2695440 bp Feature: gene Location: 2695709-2696641 bp Ori: ABD11685.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 2695712-2695994 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 269571 2-2695994 bp Feature: gene Location: 2697079-2698356 bp Ori: ABD11686.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2697478-2698168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2697478-26981 68 bp Feature: gene Location: 2699159-2699608 bp Feature: gene Location: 2699904-2700347 bp Feature: gene Location: 3014471-3015709 bp Ori: ABD11915.1 Feature: domain Description: Resolvase Location: 3014489-3014771 bp Feature: domain Description: Resolvase Location: 301 4489-301 4771 bp Feature: domain Description: Recombinase Location: 3014861-3015128 bp Feature: domain Description: Recombinase Location: 301 4861 -301 51 28 bp Feature: domain Description: Zn_ribbon_recom Location: 3015182-3015347 bp Feature: domain Description: Zn_ribbon_recom Location: 301 51 82-301 5347 bp Feature: gene Location: 3015739-3016035 bp Ori: ABD11916.1 Feature: domain Description: DDE_Tnp_4 Location: 3015742-3015967 bp Feature: domain Description: DDE_Tnp_4 Location: 301 5742-301 5967 bp Feature: gene Location: 3016889-3017440 bp Ori: ABD11917.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3016892-3017063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 6892-301 7063 bp Feature: domain Description: GIIM Note: maturase Location: 3017150-3017357 bp Feature: domain Description: GIIM Note: maturase Location: 301 71 50-301 7357 bp Feature: gene Location: 3017911-3018168 bp Ori: ABD11918.1 Feature: domain Description: PRK11409 Location: 3017923-3018148 bp Feature: domain Description: PRK1 1 409 Location: 301 7923-301 81 48 bp Feature: gene Location: 3018165-3018425 bp Ori: ABD11919.1 Feature: domain Description: YoeB_toxin Location: 3018180-3018420 bp Feature: domain Description: YoeB_toxin Location: 301 81 80-301 8420 bp Feature: gene Location: 4463431-4463817 bp Ori: ABD13080.1 Feature: domain Description: CheY Location: 4463440-4463803 bp Feature: domain Description: CheY Location: 4463440-4463803 bp Feature: gene Location: 4464250-4465068 bp Ori: ABD13081.1 Feature: domain Description: Methyltransf_25 Location: 4464424-4464703 bp Feature: domain Description: Methyltransf_25 Location: 4464424-4464703 bp Feature: gene Location: 4465366-4466388 bp Ori: ABD13082.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4465384-4466008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4465384-4466008 bp Feature: domain Description: GIIM Note: maturase Location: 4466089-4466293 bp Feature: domain Description: GIIM Note: maturase Location: 4466089-4466293 bp Feature: gene Location: 5034097-5034663 bp Ori: ABD13564.1 Feature: domain Description: DDE_Tnp_4 Location: 5034160-5034634 bp Feature: domain Description: DDE_Tnp_4 Location: 50341 60-5034634 bp Feature: gene Location: 5034800-5036101 bp Ori: ABD13565.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 5034932-5035208 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 5034932-5035208 bp Feature: domain Description: DDE_Tnp_1 Location: 5035241-5035940 bp Feature: domain Description: DDE_Tnp_1 Location: 5035241 -5035940 bp Feature: gene Location: 5036963-5037415 bp Ori: ABD13566.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5036969-5037104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5036969-50371 04 bp Feature: domain Description: GIIM Note: maturase Location: 5037173-5037305 bp Feature: domain Description: GIIM Note: maturase Location: 50371 73-5037305 bp Feature: gene Location: 5037618-5038919 bp Ori: ABD13567.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 5037750-5038026 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 5037750-5038026 bp Feature: domain Description: DDE_Tnp_1 Location: 5038059-5038758 bp Feature: domain Description: DDE_Tnp_1 Location: 5038059-5038758 bp Feature: gene Location: 5038986-5039198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT crot-CoA-red (TIGR01751), PRK07819 (3-hydroxybutyryl-CoA dehydrogenase; Validated), RVT-GII, GIIM (pfam08388), FldA (COG0716), Methyltransf_19 (pfam04672), PIN_MtVapC27-VapC40_like (cd18681), KOG2565 (KOG2565, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ), DUF664 (pfam04978), DEDD_Tnp_IS110 (pfam01548)
Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DDE_Tnp_4 (pfam13359), PRK11409 (YoeB-YefM toxin-antitoxin system antitoxin YefM), YoeB_toxin (pfam06769), CheY (COG0784), Methyltransf_25 (pfam13649), DDE_Tnp_1_assoc (pfam13808), DDE_Tnp_1 (pfam01609)