myRT

myRT report for GCA_000013445.1_ASM1344v1

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Seq: CP000254.1 Methanospirillum hungatei JF-1, complete genome (3544738 bp)
Overview 1 RT 1: 1373458-1378941 bp 2 RT 2: 1519566-1525555 bp 3 RT 3: 2407106-2415476 bp 4 RT 4: 2918403-2923015 bp 5 RT 5: 3050056-3058774 bp 6 RT 6: 3396124-3405196 bp Neighborhood of RT #1 [1373458, 1378946] archaeal_LSm PRK09293 RVT_N RVT-GII GIIM REC PRK13560 PRK13560 PRK11091 rubredoxin Neighborhood of RT #2 [1519566, 1525752] TsaA PBP2_ModA3_like RVT_N RVT-GII GIIM Dimerisation2 Methyltransf_2 RhaT Neighborhood of RT #3 [2407106, 2415476] PLN02653 RVT_N RVT-GII GIIM UDP_AE_SDR_e Neighborhood of RT #4 [2918403, 2923074] MASE3 PRK09191 PRK11360 RVT_N RVT-GII GIIM HicB Neighborhood of RT #5 [3050056, 3058774] COG0610 COG2865 RVT_N RVT-GII GIIM RMtype1_S_SonII-TRD2-CR2_like Neighborhood of RT #6 [3396124, 3405696] VCBS VCBS VCBS DDE_5 RVT_N RVT-GII GIIM DUF772 DDE_Tnp_1_6 DUF2341 COG3291 DUF2341 PKD DUF2341 Feature: gene Location: 1373458-1373697 bp Ori: ABD40952.1 Feature: domain Description: archaeal_LSm Location: 1373482-1373689 bp Feature: domain Description: archaeal_LSm Location: 1 373482-1 373689 bp Feature: gene Location: 1373758-1374693 bp Ori: ABD40953.1 Feature: domain Description: PRK09293 Location: 1373848-1374685 bp Feature: domain Description: PRK09293 Location: 1 373848-1 374685 bp Feature: gene Location: 1375335-1376807 bp Ori: ABD40954.1 Feature: domain Description: RVT_N Location: 1375404-1375644 bp Feature: domain Description: RVT_N Location: 1 375404-1 375644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1375692-1376313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 375692-1 37631 3 bp Feature: domain Description: GIIM Note: maturase Location: 1376367-1376598 bp Feature: domain Description: GIIM Note: maturase Location: 1 376367-1 376598 bp Feature: gene Location: 1376910-1378769 bp Ori: ABD40955.1 Feature: domain Description: REC Location: 1376925-1377258 bp Feature: domain Description: REC Location: 1 376925-1 377258 bp Feature: domain Description: PRK13560 Location: 1377291-1377759 bp Feature: domain Description: PRK1 3560 Location: 1 377291 -1 377759 bp Feature: domain Description: PRK13560 Location: 1377840-1378266 bp Feature: domain Description: PRK1 3560 Location: 1 377840-1 378266 bp Feature: domain Description: PRK11091 Location: 1378395-1378737 bp Feature: domain Description: PRK1 1 091 Location: 1 378395-1 378737 bp Feature: gene Location: 1378794-1378946 bp Ori: ABD40956.1 Feature: domain Description: rubredoxin Location: 1378803-1378941 bp Feature: domain Description: rubredoxin Location: 1 378803-1 378941 bp Feature: gene Location: 1519566-1520111 bp Ori: ABD41073.1 Feature: domain Description: TsaA Location: 1519608-1520043 bp Feature: domain Description: TsaA Location: 1 51 9608-1 520043 bp Feature: gene Location: 1520159-1521004 bp Ori: ABD41074.1 Feature: domain Description: PBP2_ModA3_like Location: 1520312-1520972 bp Feature: domain Description: PBP2_ModA3_like Location: 1 52031 2-1 520972 bp Feature: gene Location: 1521479-1522951 bp Ori: ABD41075.1 Feature: domain Description: RVT_N Location: 1521548-1521791 bp Feature: domain Description: RVT_N Location: 1 521 548-1 521 791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1521836-1522457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 521 836-1 522457 bp Feature: domain Description: GIIM Note: maturase Location: 1522511-1522742 bp Feature: domain Description: GIIM Note: maturase Location: 1 52251 1 -1 522742 bp Feature: gene Location: 1523695-1524714 bp Ori: ABD41076.1 Feature: domain Description: Dimerisation2 Location: 1523764-1523971 bp Feature: domain Description: Dimerisation2 Location: 1 523764-1 523971 bp Feature: domain Description: Methyltransf_2 Location: 1524151-1524520 bp Feature: domain Description: Methyltransf_2 Location: 1 5241 51 -1 524520 bp Feature: gene Location: 1524718-1525752 bp Ori: ABD41077.1 Feature: domain Description: RhaT Location: 1524724-1525555 bp Feature: domain Description: RhaT Location: 1 524724-1 525555 bp Feature: gene Location: 2407106-2408152 bp Ori: ABD41839.1 Feature: domain Description: PLN02653 Location: 2407112-2408078 bp Feature: domain Description: PLN02653 Location: 24071 1 2-2408078 bp Feature: gene Location: 2408346-2410172 bp Feature: gene Location: 2411009-2412481 bp Ori: ABD41841.1 Feature: domain Description: RVT_N Location: 2411078-2411318 bp Feature: domain Description: RVT_N Location: 241 1 078-241 1 31 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2411366-2411987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 1 366-241 1 987 bp Feature: domain Description: GIIM Note: maturase Location: 2412041-2412272 bp Feature: domain Description: GIIM Note: maturase Location: 241 2041 -241 2272 bp Feature: gene Location: 2414152-2415093 bp Ori: ABD41842.1 Feature: domain Description: UDP_AE_SDR_e Location: 2414164-2415076 bp Feature: domain Description: UDP_AE_SDR_e Location: 241 41 64-241 5076 bp Feature: gene Location: 2415177-2415476 bp Feature: gene Location: 2918403-2918678 bp Ori: ABD42341.1 Feature: domain Description: MASE3 Location: 2918487-2918637 bp Feature: domain Description: MASE3 Location: 291 8487-291 8637 bp Feature: gene Location: 2918665-2919675 bp Ori: ABD42342.1 Feature: domain Description: PRK09191 Location: 2918680-2919046 bp Feature: domain Description: PRK091 91 Location: 291 8680-291 9046 bp Feature: domain Description: PRK11360 Location: 2919055-2919610 bp Feature: domain Description: PRK1 1 360 Location: 291 9055-291 961 0 bp Feature: gene Location: 2920666-2922138 bp Ori: ABD42343.1 Feature: domain Description: RVT_N Location: 2920735-2920975 bp Feature: domain Description: RVT_N Location: 2920735-2920975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2921023-2921644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2921 023-2921 644 bp Feature: domain Description: GIIM Note: maturase Location: 2921698-2921929 bp Feature: domain Description: GIIM Note: maturase Location: 2921 698-2921 929 bp Feature: gene Location: 2922489-2922743 bp Feature: gene Location: 2922826-2923074 bp Ori: ABD42345.1 Feature: domain Description: HicB Location: 2922871-2923015 bp Feature: domain Description: HicB Location: 2922871 -292301 5 bp Feature: gene Location: 3050056-3053184 bp Ori: ABD42476.1 Feature: domain Description: COG0610 Location: 3050080-3053074 bp Feature: domain Description: COG061 0 Location: 3050080-3053074 bp Feature: gene Location: 3053190-3054605 bp Ori: ABD42477.1 Feature: domain Description: COG2865 Location: 3053193-3054507 bp Feature: domain Description: COG2865 Location: 30531 93-3054507 bp Feature: gene Location: 3056143-3057615 bp Ori: ABD42478.1 Feature: domain Description: RVT_N Location: 3056212-3056452 bp Feature: domain Description: RVT_N Location: 305621 2-3056452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3056500-3057121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3056500-30571 21 bp Feature: domain Description: GIIM Note: maturase Location: 3057175-3057406 bp Feature: domain Description: GIIM Note: maturase Location: 30571 75-3057406 bp Feature: gene Location: 3057692-3058057 bp Ori: ABD42479.1 Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 3057719-3058052 bp Feature: domain Description: RMtype1 _S_SonII-TRD2-CR2_like Location: 305771 9-3058052 bp Feature: gene Location: 3058061-3058774 bp Feature: gene Location: 3396124-3396888 bp Ori: ABD42808.1 Feature: domain Description: VCBS Location: 3396196-3396331 bp Feature: domain Description: VCBS Location: 33961 96-3396331 bp Feature: domain Description: VCBS Location: 3396337-3396475 bp Feature: domain Description: VCBS Location: 3396337-3396475 bp Feature: domain Description: VCBS Location: 3396625-3396763 bp Feature: domain Description: VCBS Location: 3396625-3396763 bp Feature: gene Location: 3396948-3397934 bp Ori: ABD42809.1 Feature: domain Description: DDE_5 Location: 3397056-3397533 bp Feature: domain Description: DDE_5 Location: 3397056-3397533 bp Feature: gene Location: 3397846-3399309 bp Ori: ABD42810.1 Feature: domain Description: RVT_N Location: 3397915-3398155 bp Feature: domain Description: RVT_N Location: 339791 5-33981 55 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3398203-3398824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3398203-3398824 bp Feature: domain Description: GIIM Note: maturase Location: 3398878-3399109 bp Feature: domain Description: GIIM Note: maturase Location: 3398878-33991 09 bp Feature: gene Location: 3400228-3401838 bp Ori: ABD42811.1 Feature: domain Description: DUF772 Location: 3400414-3400609 bp Feature: domain Description: DUF772 Location: 340041 4-3400609 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3401473-3401686 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 3401 473-3401 686 bp Feature: gene Location: 3402208-3405696 bp Ori: ABD42812.1 Feature: domain Description: DUF2341 Location: 3402673-3402901 bp Feature: domain Description: DUF2341 Location: 3402673-3402901 bp Feature: domain Description: COG3291 Location: 3403192-3403798 bp Feature: domain Description: COG3291 Location: 34031 92-3403798 bp Feature: domain Description: DUF2341 Location: 3403825-3404053 bp Feature: domain Description: DUF2341 Location: 3403825-3404053 bp Feature: domain Description: PKD Location: 3404572-3404797 bp Feature: domain Description: PKD Location: 3404572-3404797 bp Feature: domain Description: DUF2341 Location: 3404968-3405196 bp Feature: domain Description: DUF2341 Location: 3404968-34051 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT archaeal_LSm (cd11678), PRK09293 (class 1 fructose-bisphosphatase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), REC (smart00448), PRK13560 (hypothetical protein; Provisional), PRK11091 (aerobic respiration control sensor protein ArcB; Provisional), rubredoxin (cd00730), TsaA (COG1720)
PBP2_ModA3_like (cd13517), Dimerisation2, Methyltransf_2 (pfam00891), RhaT (TIGR00776), PLN02653 (GDP-mannose 4,6-dehydratase), UDP_AE_SDR_e (cd05256), MASE3 (pfam17159), PRK09191 (two-component response regulator; Provisional), PRK11360 (two-component system sensor histidine kinase AtoS), HicB (pfam05534)
COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RMtype1_S_SonII-TRD2-CR2_like (cd17246), VCBS (pfam13517), DDE_5 (pfam13546), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751), DUF2341 (pfam10102), COG3291 (PKD repeat ), PKD (smart00089)