myRT

myRT report for GCA_000013785.1_ASM1378v1

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Seq: CP000304.1 Pseudomonas stutzeri A1501, complete genome (4567418 bp)
Overview 1 RT 1: 754035-759380 bp 2 RT 2: 804966-808980 bp 3 RT 3: 1271344-1276295 bp 4 RT 4: 1830548-1835220 bp 5 RT 5: 1958993-1967017 bp 6 RT 6: 3671010-3674829 bp Neighborhood of RT #1 [754035, 759380] IS5 RVT_N RVT-GII GIIM IS5 Neighborhood of RT #2 [804966, 808980] InsE PHA02517 RVT-UG2 HTH_23 HTH_33 DDE_3 Neighborhood of RT #3 [1271344, 1276300] MvaT_DBD IS5 RVT_N RVT-GII GIIM IS5 purU Neighborhood of RT #4 [1830548, 1835270] Tra5 HTH_Tnp_1 RVT-GII GIIM IS5 YejF Neighborhood of RT #5 [1958993, 1967025] PRK01766 PRK00257 RVT_N RVT-GII YkfC HNHc PRK07994 PRK00153 Neighborhood of RT #6 [3671010, 3674855] IS5 RVT_N RVT-GII GIIM IS5 DUF2384 Feature: gene Location: 754035-754769 bp Feature: gene Location: 755223-755747 bp Ori: ABP78363.1 Feature: domain Description: IS5 Location: 755403-755736 bp Feature: domain Description: IS5 Location: 755403-755736 bp Feature: gene Location: 756340-757845 bp Ori: ABP78364.1 Feature: domain Description: RVT_N Location: 756421-756646 bp Feature: domain Description: RVT_N Location: 756421 -756646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756697-757339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756697-757339 bp Feature: domain Description: GIIM Note: maturase Location: 757390-757624 bp Feature: domain Description: GIIM Note: maturase Location: 757390-757624 bp Feature: gene Location: 757957-758376 bp Ori: ABP78365.1 Feature: domain Description: IS5 Location: 757960-758347 bp Feature: domain Description: IS5 Location: 757960-758347 bp Feature: gene Location: 758550-759380 bp Feature: gene Location: 804966-805265 bp Ori: ABP78403.1 Feature: domain Description: InsE Location: 804996-805260 bp Feature: domain Description: InsE Location: 804996-805260 bp Feature: gene Location: 805277-805927 bp Ori: ABP78404.1 Feature: domain Description: PHA02517 Location: 805328-805925 bp Feature: domain Description: PHA0251 7 Location: 805328-805925 bp Feature: gene Location: 806588-807772 bp Ori: ABP78405.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 806780-807566 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 806780-807566 bp Feature: gene Location: 807786-808823 bp Ori: ABP78406.1 Feature: domain Description: HTH_23 Location: 807828-807933 bp Feature: domain Description: HTH_23 Location: 807828-807933 bp Feature: domain Description: HTH_33 Location: 808083-808254 bp Feature: domain Description: HTH_33 Location: 808083-808254 bp Feature: domain Description: DDE_3 Location: 808305-808728 bp Feature: domain Description: DDE_3 Location: 808305-808728 bp Feature: gene Location: 808825-808980 bp Feature: gene Location: 1271344-1271751 bp Ori: ABP78856.1 Gene: mvaT Feature: domain Description: MvaT_DBD Location: 1271617-1271737 bp Feature: domain Description: MvaT_DBD Location: 1 271 61 7-1 271 737 bp Feature: gene Location: 1271993-1272412 bp Ori: ABP78857.1 Feature: domain Description: IS5 Location: 1271996-1272377 bp Feature: domain Description: IS5 Location: 1 271 996-1 272377 bp Feature: gene Location: 1272524-1274029 bp Ori: ABP78858.1 Feature: domain Description: RVT_N Location: 1272605-1272830 bp Feature: domain Description: RVT_N Location: 1 272605-1 272830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1272881-1273523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 272881 -1 273523 bp Feature: domain Description: GIIM Note: maturase Location: 1273574-1273808 bp Feature: domain Description: GIIM Note: maturase Location: 1 273574-1 273808 bp Feature: gene Location: 1274623-1275147 bp Ori: ABP78859.1 Feature: domain Description: IS5 Location: 1274800-1275136 bp Feature: domain Description: IS5 Location: 1 274800-1 2751 36 bp Feature: gene Location: 1275467-1276300 bp Ori: ABP78860.1 Gene: purU1 Feature: domain Description: purU Location: 1275473-1276295 bp Feature: domain Description: purU Location: 1 275473-1 276295 bp Feature: gene Location: 1830548-1831348 bp Ori: ABP79382.1 Feature: domain Description: Tra5 Location: 1830758-1831331 bp Feature: domain Description: Tra5 Location: 1 830758-1 831 331 bp Feature: gene Location: 1831369-1831635 bp Ori: ABP79383.1 Feature: domain Description: HTH_Tnp_1 Location: 1831378-1831582 bp Feature: domain Description: HTH_Tnp_1 Location: 1 831 378-1 831 582 bp Feature: gene Location: 1831696-1832724 bp Ori: ABP79384.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1831708-1832323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 831 708-1 832323 bp Feature: domain Description: GIIM Note: maturase Location: 1832404-1832629 bp Feature: domain Description: GIIM Note: maturase Location: 1 832404-1 832629 bp Feature: gene Location: 1832721-1833254 bp Ori: ABP79385.1 Feature: domain Description: IS5 Location: 1832781-1833228 bp Feature: domain Description: IS5 Location: 1 832781 -1 833228 bp Feature: gene Location: 1833654-1835270 bp Ori: ABP79386.1 Feature: domain Description: YejF Location: 1833660-1835220 bp Feature: domain Description: YejF Location: 1 833660-1 835220 bp Feature: gene Location: 1958993-1960387 bp Ori: ABP79491.1 Feature: domain Description: PRK01766 Location: 1959017-1960361 bp Feature: domain Description: PRK01 766 Location: 1 95901 7-1 960361 bp Feature: gene Location: 1960509-1961654 bp Ori: ABP79492.1 Gene: pdxB Feature: domain Description: PRK00257 Location: 1960512-1961646 bp Feature: domain Description: PRK00257 Location: 1 96051 2-1 961 646 bp Feature: gene Location: 1962769-1964508 bp Ori: ABP79493.1 Feature: domain Description: RVT_N Location: 1962829-1963072 bp Feature: domain Description: RVT_N Location: 1 962829-1 963072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1963120-1963771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9631 20-1 963771 bp Feature: domain Description: YkfC Location: 1963936-1964134 bp Feature: domain Description: YkfC Location: 1 963936-1 9641 34 bp Feature: domain Description: HNHc Note: nucleases Location: 1964305-1964461 bp Feature: domain Description: HNHc Note: nucleases Location: 1 964305-1 964461 bp Feature: gene Location: 1964616-1966679 bp Ori: ABP79494.1 Gene: dnaX Feature: domain Description: PRK07994 Location: 1964664-1966662 bp Feature: domain Description: PRK07994 Location: 1 964664-1 966662 bp Feature: gene Location: 1966744-1967025 bp Ori: ABP79495.1 Feature: domain Description: PRK00153 Location: 1966747-1967017 bp Feature: domain Description: PRK001 53 Location: 1 966747-1 96701 7 bp Feature: gene Location: 3671010-3671156 bp Feature: gene Location: 3671292-3671711 bp Ori: ABP81026.1 Feature: domain Description: IS5 Location: 3671295-3671679 bp Feature: domain Description: IS5 Location: 3671 295-3671 679 bp Feature: gene Location: 3671821-3673326 bp Ori: ABP81027.1 Feature: domain Description: RVT_N Location: 3671902-3672127 bp Feature: domain Description: RVT_N Location: 3671 902-36721 27 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3672178-3672820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36721 78-3672820 bp Feature: domain Description: GIIM Note: maturase Location: 3672871-3673105 bp Feature: domain Description: GIIM Note: maturase Location: 3672871 -36731 05 bp Feature: gene Location: 3673919-3674452 bp Ori: ABP81028.1 Feature: domain Description: IS5 Location: 3674108-3674441 bp Feature: domain Description: IS5 Location: 36741 08-3674441 bp Feature: gene Location: 3674484-3674855 bp Ori: ABP81029.1 Feature: domain Description: DUF2384 Location: 3674700-3674829 bp Feature: domain Description: DUF2384 Location: 3674700-3674829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-UG2, HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358)
MvaT_DBD (cl40688), purU (PRK13010), Tra5 (COG2801), HTH_Tnp_1 (pfam01527), YejF (COG4172), PRK01766 (multidrug efflux protein; Reviewed), PRK00257 (4-phosphoerythronate dehydrogenase PdxB), YkfC (COG3344), HNHc (smart00507), PRK07994 (DNA polymerase III subunits gamma and tau; Validated)
PRK00153 (YbaB/EbfC family nucleoid-associated protein), DUF2384 (pfam09722)