myRT

myRT report for GCA_000013865.1_ASM1386v1

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Seq: CP000318.1 Polaromonas sp. JS666 plasmid 2, complete sequence (338007 bp)
Overview 1 RT 1: 150954-156713 bp Neighborhood of RT #1 [150954, 156859] RVT-GII GIIM RVT-GII GIIM InsQ Feature: gene Location: 150954-151355 bp Feature: gene Location: 151426-151734 bp Feature: gene Location: 151906-153291 bp Ori: ABE47248.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152257-152869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 52257-1 52869 bp Feature: domain Description: GIIM Note: maturase Location: 152929-153139 bp Feature: domain Description: GIIM Note: maturase Location: 1 52929-1 531 39 bp Feature: gene Location: 153379-153642 bp Feature: gene Location: 153785-155155 bp Ori: ABE47250.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154121-154733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 541 21 -1 54733 bp Feature: domain Description: GIIM Note: maturase Location: 154793-154991 bp Feature: domain Description: GIIM Note: maturase Location: 1 54793-1 54991 bp Feature: gene Location: 155152-155466 bp Feature: gene Location: 155591-156859 bp Ori: ABE47252.1 Feature: domain Description: InsQ Location: 155594-156713 bp Feature: domain Description: InsQ Location: 1 55594-1 5671 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: CP000316.1 Polaromonas sp. JS666, complete genome (5200264 bp)
Overview 1 RT 1: 969005-974669 bp 2 RT 2: 4876063-4884128 bp 3 RT 3: 4894902-4901544 bp 4 RT 4: 5186681-5193841 bp Neighborhood of RT #1 [969005, 974755] SmrA PRK00024 RVT_N RVT-GII GIIM HNHc SlpA ispH Neighborhood of RT #2 [4876063, 4884160] NarQ holA RVT_N RVT-GII GIIM HNHc PRK07589 Arginase Neighborhood of RT #3 [4894902, 4901582] EcCorA-like_1 pyrF RVT_N RVT-GII GIIM HNHc RhaT UDG_F4_TTUDGA_like Neighborhood of RT #4 [5186681, 5193870] KdsC PRK10892 RVT_N RVT-GII GIIM HNHc PRK03562 TrkA_C PRK06193 Feature: gene Location: 969005-969670 bp Ori: ABE42903.1 Feature: domain Description: SmrA Location: 969128-969665 bp Feature: domain Description: SmrA Location: 96912 8-969665 bp Feature: gene Location: 969681-970415 bp Ori: ABE42904.1 Feature: domain Description: PRK00024 Location: 969750-970410 bp Feature: domain Description: PRK0002 4 Location: 969750-970410 bp Feature: gene Location: 970565-972274 bp Ori: ABE42905.1 Feature: domain Description: RVT_N Location: 970616-970856 bp Feature: domain Description: RVT_N Location: 970616-970856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970904-971549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970904-971549 bp Feature: domain Description: GIIM Note: maturase Location: 971603-971840 bp Feature: domain Description: GIIM Note: maturase Location: 971603-971840 bp Feature: domain Description: HNHc Note: nucleases Location: 972056-972227 bp Feature: domain Description: HNHc Note: nucleases Location: 972 056-972 2 2 7 bp Feature: gene Location: 973284-973757 bp Ori: ABE42906.1 Feature: domain Description: SlpA Location: 973320-973752 bp Feature: domain Description: SlpA Location: 97332 0-973752 bp Feature: gene Location: 973754-974755 bp Ori: ABE42907.1 Feature: domain Description: ispH Location: 973784-974669 bp Feature: domain Description: ispH Location: 973784-974669 bp Feature: gene Location: 4876063-4877976 bp Ori: ABE46482.1 Feature: domain Description: NarQ Location: 4876078-4877920 bp Feature: domain Description: NarQ Location: 4876078-487792 0 bp Feature: gene Location: 4877981-4879105 bp Ori: ABE46483.1 Feature: domain Description: holA Location: 4878005-4879040 bp Feature: domain Description: holA Location: 4878005-4879040 bp Feature: gene Location: 4879178-4880935 bp Ori: ABE46484.1 Feature: domain Description: RVT_N Location: 4879229-4879469 bp Feature: domain Description: RVT_N Location: 48792 2 9-4879469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4879517-4880165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4879517-4880165 bp Feature: domain Description: GIIM Note: maturase Location: 4880216-4880453 bp Feature: domain Description: GIIM Note: maturase Location: 48802 16-4880453 bp Feature: domain Description: HNHc Note: nucleases Location: 4880669-4880840 bp Feature: domain Description: HNHc Note: nucleases Location: 4880669-4880840 bp Feature: gene Location: 4882152-4883249 bp Ori: ABE46485.1 Feature: domain Description: PRK07589 Location: 4882155-4883181 bp Feature: domain Description: PRK07589 Location: 4882 155-4883181 bp Feature: gene Location: 4883246-4884160 bp Ori: ABE46486.1 Feature: domain Description: Arginase Location: 4883261-4884128 bp Feature: domain Description: Arginase Location: 48832 61-488412 8 bp Feature: gene Location: 4894902-4895888 bp Ori: ABE46498.1 Feature: domain Description: EcCorA-like_1 Location: 4894992-4895883 bp Feature: domain Description: EcCorA-like_1 Location: 4894992 -4895883 bp Feature: gene Location: 4895981-4896838 bp Ori: ABE46499.1 Feature: domain Description: pyrF Location: 4896014-4896824 bp Feature: domain Description: pyrF Location: 4896014-489682 4 bp Feature: gene Location: 4896911-4898668 bp Ori: ABE46500.1 Feature: domain Description: RVT_N Location: 4896962-4897205 bp Feature: domain Description: RVT_N Location: 4896962 -48972 05 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4897250-4897898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48972 50-4897898 bp Feature: domain Description: GIIM Note: maturase Location: 4897949-4898186 bp Feature: domain Description: GIIM Note: maturase Location: 4897949-4898186 bp Feature: domain Description: HNHc Note: nucleases Location: 4898402-4898573 bp Feature: domain Description: HNHc Note: nucleases Location: 4898402 -4898573 bp Feature: gene Location: 4899899-4900795 bp Ori: ABE46501.1 Feature: domain Description: RhaT Location: 4899911-4900757 bp Feature: domain Description: RhaT Location: 4899911-4900757 bp Feature: gene Location: 4900800-4901582 bp Ori: ABE46502.1 Feature: domain Description: UDG_F4_TTUDGA_like Location: 4901097-4901544 bp Feature: domain Description: UDG_F4_TTUDGA_like Location: 4901097-4901544 bp Feature: gene Location: 5186681-5187280 bp Ori: ABE46773.1 Feature: domain Description: KdsC Location: 5186777-5187272 bp Feature: domain Description: KdsC Location: 5186777-51872 72 bp Feature: gene Location: 5187277-5188284 bp Ori: ABE46774.1 Feature: domain Description: PRK10892 Location: 5187343-5188282 bp Feature: domain Description: PRK10892 Location: 5187343-51882 82 bp Feature: gene Location: 5188357-5190114 bp Ori: ABE46775.1 Feature: domain Description: RVT_N Location: 5188408-5188648 bp Feature: domain Description: RVT_N Location: 5188408-5188648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5188696-5189344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5188696-5189344 bp Feature: domain Description: GIIM Note: maturase Location: 5189395-5189632 bp Feature: domain Description: GIIM Note: maturase Location: 5189395-5189632 bp Feature: domain Description: HNHc Note: nucleases Location: 5189848-5190019 bp Feature: domain Description: HNHc Note: nucleases Location: 5189848-5190019 bp Feature: gene Location: 5191166-5193160 bp Ori: ABE46776.1 Feature: domain Description: PRK03562 Location: 5191181-5192861 bp Feature: domain Description: PRK03562 Location: 5191181-5192 861 bp Feature: domain Description: TrkA_C Location: 5192942-5193137 bp Feature: domain Description: TrkA_C Location: 5192 942 -5193137 bp Feature: gene Location: 5193307-5193870 bp Ori: ABE46777.1 Feature: domain Description: PRK06193 Location: 5193388-5193841 bp Feature: domain Description: PRK06193 Location: 5193388-5193841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmrA (COG2840), PRK00024 (DNA repair protein RadC), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SlpA (COG1047), ispH (PRK01045), NarQ (COG3850), holA (TIGR01128)
PRK07589 (ornithine cyclodeaminase; Validated), Arginase (pfam00491), EcCorA-like_1 (cd12835), pyrF (TIGR01740), RhaT (TIGR00776), UDG_F4_TTUDGA_like, KdsC (COG1778), PRK10892 (arabinose-5-phosphate isomerase KdsD), PRK03562 (glutathione-regulated potassium-efflux system protein KefC; Provisional), TrkA_C (pfam02080)
PRK06193 (hypothetical protein; Provisional)