myRT

myRT report for GCA_000014045.1_ASM1404v1

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Seq: CP000362.1 Roseobacter denitrificans OCh 114, complete genome (4133097 bp)
Overview 1 RT 1: 1106443-1108109 bp 2 RT 2: 2137358-2143016 bp 3 RT 3: 2368323-2380711 bp Neighborhood of RT #1 [1106443, 1108630] HTH_Tnp_1 Tra5 RVT-UG17 Neighborhood of RT #2 [2137358, 2143024] HsdR EcoEI_R_C RVT-UG2 COG3380 Neighborhood of RT #3 [2368323, 2380716] DUF3883 helD helD zf-C4_Topoisom RVT-UG8 RVT-UG3 COG2931 Int_alpha Int_alpha Int_alpha Int_alpha Int_alpha Int_alpha DUF1203 Feature: gene Location: 1106443-1106709 bp Ori: ABG30797.1 Feature: domain Description: HTH_Tnp_1 Location: 1106449-1106656 bp Feature: domain Description: HTH_Tnp_1 Location: 1 1 06449-1 1 06656 bp Feature: gene Location: 1106733-1107557 bp Ori: ABG30798.1 Feature: domain Description: Tra5 Location: 1106766-1107516 bp Feature: domain Description: Tra5 Location: 1 1 06766-1 1 0751 6 bp Feature: gene Location: 1107704-1108630 bp Ori: ABG30799.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1107785-1108109 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 1 07785-1 1 081 09 bp Feature: gene Location: 2137358-2139706 bp Ori: ABG31825.1 Feature: domain Description: HsdR Location: 2137379-2139011 bp Feature: domain Description: HsdR Location: 21 37379-21 3901 1 bp Feature: domain Description: EcoEI_R_C Location: 2139230-2139698 bp Feature: domain Description: EcoEI_R_C Location: 21 39230-21 39698 bp Feature: gene Location: 2140033-2140134 bp Feature: gene Location: 2140244-2141614 bp Ori: ABG31827.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2140520-2141300 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 21 40520-21 41 300 bp Feature: gene Location: 2141873-2142031 bp Feature: gene Location: 2142056-2143024 bp Ori: ABG31829.1 Feature: domain Description: COG3380 Location: 2142074-2143016 bp Feature: domain Description: COG3380 Location: 21 42074-21 4301 6 bp Feature: gene Location: 2368323-2369162 bp Ori: ABG32048.1 Feature: domain Description: DUF3883 Location: 2368806-2369091 bp Feature: domain Description: DUF3883 Location: 2368806-2369091 bp Feature: gene Location: 2369250-2372000 bp Ori: ABG32049.1 Gene: helD Feature: domain Description: helD Location: 2369268-2370012 bp Feature: domain Description: helD Location: 2369268-237001 2 bp Feature: domain Description: helD Location: 2370720-2371638 bp Feature: domain Description: helD Location: 2370720-2371 638 bp Feature: domain Description: zf-C4_Topoisom Location: 2371875-2371980 bp Feature: domain Description: zf-C4_Topoisom Location: 2371 875-2371 980 bp Feature: gene Location: 2373866-2375803 bp Ori: ABG32050.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2374376-2374823 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2374376-2374823 bp Feature: gene Location: 2375796-2377076 bp Ori: ABG32051.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2376081-2376564 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2376081 -2376564 bp Feature: gene Location: 2377621-2379657 bp Ori: ABG32052.1 Feature: domain Description: COG2931 Location: 2377627-2378125 bp Feature: domain Description: COG2931 Location: 2377627-23781 25 bp Feature: domain Description: Int_alpha Location: 2378287-2378419 bp Feature: domain Description: Int_alpha Location: 2378287-237841 9 bp Feature: domain Description: Int_alpha Location: 2378527-2378662 bp Feature: domain Description: Int_alpha Location: 2378527-2378662 bp Feature: domain Description: Int_alpha Location: 2378740-2378848 bp Feature: domain Description: Int_alpha Location: 2378740-2378848 bp Feature: domain Description: Int_alpha Location: 2378965-2379043 bp Feature: domain Description: Int_alpha Location: 2378965-2379043 bp Feature: domain Description: Int_alpha Location: 2379190-2379325 bp Feature: domain Description: Int_alpha Location: 23791 90-2379325 bp Feature: domain Description: Int_alpha Location: 2379436-2379559 bp Feature: domain Description: Int_alpha Location: 2379436-2379559 bp Feature: gene Location: 2380252-2380716 bp Ori: ABG32053.1 Feature: domain Description: DUF1203 Location: 2380363-2380711 bp Feature: domain Description: DUF1 203 Location: 2380363-238071 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), Tra5 (COG2801), RVT-UG17, HsdR (COG4096), EcoEI_R_C (pfam08463), RVT-UG2, COG3380 (Predicted NAD/FAD-dependent oxidoreductase ), DUF3883 (pfam13020), helD (PRK11054), zf-C4_Topoisom (pfam01396)
RVT-UG8, RVT-UG3, COG2931 (Ca2+-binding protein, RTX toxin-related ), Int_alpha (smart00191), DUF1203 (pfam06718)