myRT

myRT report for GCA_000014565.1_ASM1456v1

Download annotations/find similar RTs

Seq: CP000431.1 Rhodococcus jostii RHA1, complete genome (7804765 bp)
Overview 1 RT 1: 847294-851785 bp Neighborhood of RT #1 [847294, 851790] NfsA_FRP SDR_c RVT-Retrons TIGR00004 GlnQ Feature: gene Location: 847294-848169 bp Ori: ABG92632.1 Feature: domain Description: NfsA_FRP Location: 847432-848092 bp Feature: domain Description: NfsA_FRP Location: 847432-848092 bp Feature: gene Location: 848309-849049 bp Ori: ABG92633.1 Feature: domain Description: SDR_c Location: 848327-848990 bp Feature: domain Description: SDR_c Location: 848327-848990 bp Feature: gene Location: 849062-849859 bp Ori: ABG92634.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 849065-849617 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 849065-84961 7 bp Feature: gene Location: 850584-850967 bp Ori: ABG92635.1 Feature: domain Description: TIGR00004 Location: 850596-850953 bp Feature: domain Description: TIGR00004 Location: 850596-850953 bp Feature: gene Location: 851026-851790 bp Ori: ABG92636.1 Feature: domain Description: GlnQ Location: 851041-851785 bp Feature: domain Description: GlnQ Location: 851 041 -851 785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NfsA_FRP, SDR_c (cd05233), RVT-Retrons, TIGR00004 (reactive intermediate/imine deaminase), GlnQ (COG1126)

Seq: CP000432.1 Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence (1123075 bp)
Overview 1 RT 1: 22048-26100 bp Neighborhood of RT #1 [22048, 26201] DDE_Tnp_ISAZ013 DDE_Tnp_ISAZ013 RVT-GII GIIM DDE_Tnp_ISAZ013 HTH_Tnp_4 Feature: gene Location: 22048-22755 bp Ori: ABG99071.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 22330-22624 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 2 2 330-2 2 62 4 bp Feature: gene Location: 22752-23321 bp Ori: ABG99072.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 22758-23004 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 2 2 758-2 3004 bp Feature: gene Location: 23100-24479 bp Ori: ABG99073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23418-24048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3418-2 4048 bp Feature: domain Description: GIIM Note: maturase Location: 24132-24360 bp Feature: domain Description: GIIM Note: maturase Location: 2 4132 -2 4360 bp Feature: gene Location: 25031-25747 bp Ori: ABG99074.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 25058-25307 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 2 5058-2 5307 bp Feature: gene Location: 25818-26201 bp Ori: ABG99075.1 Feature: domain Description: HTH_Tnp_4 Location: 25965-26100 bp Feature: domain Description: HTH_Tnp_4 Location: 2 5965-2 6100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISAZ013 (pfam07592), RVT-GII, GIIM (pfam08388), HTH_Tnp_4 (pfam13613)

Seq: CP000433.1 Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence (442536 bp)
Overview 1 RT 1: 184170-189853 bp Neighborhood of RT #1 [184170, 189853] COG3293 COG3293 DDE_Tnp_1_4 RVT-GII GIIM DDE_Tnp_1_4 Feature: gene Location: 184170-185039 bp Ori: ABH00382.1 Feature: domain Description: COG3293 Location: 184257-184575 bp Feature: domain Description: COG3 293 Location: 184257-184575 bp Feature: domain Description: COG3293 Location: 184641-185019 bp Feature: domain Description: COG3 293 Location: 184641-185019 bp Feature: gene Location: 185315-185683 bp Ori: ABH00383.1 Feature: domain Description: DDE_Tnp_1_4 Location: 185345-185672 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1853 45-185672 bp Feature: gene Location: 185875-187269 bp Ori: ABH00384.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186139-186835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18613 9-18683 5 bp Feature: domain Description: GIIM Note: maturase Location: 186907-187120 bp Feature: domain Description: GIIM Note: maturase Location: 186907-187120 bp Feature: gene Location: 187842-188885 bp Ori: ABH00385.1 Feature: domain Description: DDE_Tnp_1_4 Location: 187854-188796 bp Feature: domain Description: DDE_Tnp_1_4 Location: 187854-188796 bp Feature: gene Location: 189314-189853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3293 (Transposase ), DDE_Tnp_1_4 (pfam13701), RVT-GII, GIIM (pfam08388)