myRT

myRT report for GCA_000014665.1_ASM1466v1

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Seq: CP000444.1 Shewanella sp. MR-7, complete genome (4792610 bp)
Overview 1 RT 1: 376102-385012 bp 2 RT 2: 574613-580596 bp 3 RT 3: 643863-651224 bp Neighborhood of RT #1 [376102, 385012] LysR PRK09449 RVT-UG5 nitrilase ABC_ATPase ABC_ATPase Neighborhood of RT #2 [574613, 580601] PRK11087 UbiE RVT-Retrons PRK13960 Neighborhood of RT #3 [643863, 651259] groES groEL RVT_N RVT-GII GIIM HNHc couple_hipB HipA_So_like Feature: gene Location: 376102-376998 bp Ori: ABI41344.1 Feature: domain Description: LysR Location: 376114-376981 bp Feature: domain Description: LysR Location: 3761 1 4-376981 bp Feature: gene Location: 377357-378073 bp Ori: ABI41345.1 Feature: domain Description: PRK09449 Location: 377396-378059 bp Feature: domain Description: PRK09449 Location: 377396-378059 bp Feature: gene Location: 378375-381578 bp Ori: ABI41346.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 378906-379407 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 378906-379407 bp Feature: domain Description: nitrilase Location: 380895-381489 bp Feature: domain Description: nitrilase Location: 380895-381 489 bp Feature: gene Location: 381575-383341 bp Ori: ABI41347.1 Feature: domain Description: ABC_ATPase Location: 381659-381719 bp Feature: domain Description: ABC_ATPase Location: 381 659-381 71 9 bp Feature: domain Description: ABC_ATPase Location: 382493-382694 bp Feature: domain Description: ABC_ATPase Location: 382493-382694 bp Feature: gene Location: 384590-385012 bp Feature: gene Location: 574613-575323 bp Ori: ABI41503.1 Feature: domain Description: PRK11087 Location: 574670-575321 bp Feature: domain Description: PRK1 1 087 Location: 574670-575321 bp Feature: gene Location: 575594-576385 bp Ori: ABI41504.1 Feature: domain Description: UbiE Location: 575612-576032 bp Feature: domain Description: UbiE Location: 57561 2-576032 bp Feature: gene Location: 577157-578359 bp Ori: ABI41505.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 577304-577910 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 577304-57791 0 bp Feature: gene Location: 578349-579059 bp Feature: gene Location: 579498-580601 bp Ori: ABI41507.1 Feature: domain Description: PRK13960 Location: 579501-580596 bp Feature: domain Description: PRK1 3960 Location: 579501 -580596 bp Feature: gene Location: 643863-644153 bp Ori: ABI41557.1 Feature: domain Description: groES Location: 643866-644148 bp Feature: domain Description: groES Location: 643866-6441 48 bp Feature: gene Location: 644211-645848 bp Ori: ABI41558.1 Feature: domain Description: groEL Location: 644217-645834 bp Feature: domain Description: groEL Location: 64421 7-645834 bp Feature: gene Location: 647011-648660 bp Ori: ABI41559.1 Feature: domain Description: RVT_N Location: 647062-647302 bp Feature: domain Description: RVT_N Location: 647062-647302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647350-647995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647350-647995 bp Feature: domain Description: GIIM Note: maturase Location: 648049-648280 bp Feature: domain Description: GIIM Note: maturase Location: 648049-648280 bp Feature: domain Description: HNHc Note: nucleases Location: 648493-648652 bp Feature: domain Description: HNHc Note: nucleases Location: 648493-648652 bp Feature: gene Location: 649718-649954 bp Ori: ABI41560.1 Feature: domain Description: couple_hipB Location: 649745-649907 bp Feature: domain Description: couple_hipB Location: 649745-649907 bp Feature: gene Location: 649988-651259 bp Ori: ABI41561.1 Feature: domain Description: HipA_So_like Location: 650036-651224 bp Feature: domain Description: HipA_So_like Location: 650036-651 224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), PRK09449 (dUMP phosphatase; Provisional), RVT-UG5, nitrilase (cl11424), ABC_ATPase (pfam09818), PRK11087 (oxidative stress defense protein; Provisional), UbiE (COG2226), RVT-Retrons, PRK13960 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional), groES (PRK14533)
groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), couple_hipB (TIGR03070), HipA_So_like (cd17809)