myRT

myRT report for GCA_000014725.1_ASM1472v1

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Seq: CP000448.1 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, complete genome (2936195 bp)
Overview 1 RT 1: 164860-173081 bp 2 RT 2: 175574-182721 bp 3 RT 3: 192896-200542 bp 4 RT 4: 216789-224191 bp 5 RT 5: 354930-368320 bp 6 RT 6: 1174658-1181219 bp 7 RT 7: 1441661-1448040 bp 8 RT 8: 1941894-1946667 bp 9 RT 9: 2166665-2174100 bp 10 RT 10: 2253424-2259453 bp 11 RT 11: 2385000-2393318 bp 12 RT 12: 2792183-2797700 bp Neighborhood of RT #1 [164860, 173425] NT_KNTase_like RVT-GII GIIM Transposase_31 RAYT Neighborhood of RT #2 [175574, 182750] DDE_Tnp_1_6 BeeE RVT-GII IS285 YdhJ Neighborhood of RT #3 [192896, 200622] Y1_Tnp PQQ PQQ_2 CHB_HEX_C_1 swm_rep_I Big_5 RVT-GII GIIM CtpA Big_5 Neighborhood of RT #4 [216789, 224355] AcrB AcrR RVT-GII GIIM PRK03598 CcmA Neighborhood of RT #5 [354930, 368328] YprA YprA RVT-GII GIIM YSH1 RocR PAS FhlA Neighborhood of RT #6 [1174658, 1181638] SIR2_Af2 NLPC_P60 RVT-GII GIIM SMODS COG4870 Neighborhood of RT #7 [1441661, 1448069] YmdB RVT-GII GIIM RNase_Y recA Neighborhood of RT #8 [1941894, 1946684] ThiS DUF3006 RVT-GII GIIM ComEC Ada_Zn_binding SodA Neighborhood of RT #9 [2166665, 2174117] dut DPG_synthase PMT_2 RVT-GII GIIM fabG SatP Neighborhood of RT #10 [2253424, 2259473] COG1569 AbrB RVT-GII GIIM lipoamide_DH PRK04366 Neighborhood of RT #11 [2385000, 2393332] PRK04914 PRK04914 pepcterm_ATPase RVT-UG13 PHA02517 Neighborhood of RT #12 [2792183, 2797759] napH napH RVT-GII GIIM PRK12856 DUF772 DDE_Tnp_1 Feature: gene Location: 164860-168912 bp Feature: gene Location: 169699-170094 bp Ori: ABI67499.1 Feature: domain Description: NT_KNTase_like Location: 169759-169981 bp Feature: domain Description: NT_KNTase_like Location: 1 69759-1 69981 bp Feature: gene Location: 170637-171968 bp Ori: ABI67500.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170892-171585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 70892-1 71 585 bp Feature: domain Description: GIIM Note: maturase Location: 171669-171873 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 669-1 71 873 bp Feature: gene Location: 172219-172644 bp Ori: ABI67501.1 Feature: domain Description: Transposase_31 Location: 172234-172594 bp Feature: domain Description: Transposase_31 Location: 1 72234-1 72594 bp Feature: gene Location: 172715-173425 bp Ori: ABI67502.1 Feature: domain Description: RAYT Location: 172730-173081 bp Feature: domain Description: RAYT Location: 1 72730-1 73081 bp Feature: gene Location: 175574-176536 bp Ori: ABI67506.1 Feature: domain Description: DDE_Tnp_1_6 Location: 176198-176450 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 761 98-1 76450 bp Feature: gene Location: 177292-177561 bp Ori: ABI67507.1 Feature: domain Description: BeeE Location: 177325-177514 bp Feature: domain Description: BeeE Location: 1 77325-1 7751 4 bp Feature: gene Location: 178013-178423 bp Ori: ABI67508.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178268-178400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 78268-1 78400 bp Feature: gene Location: 178656-179882 bp Ori: ABI67509.1 Feature: domain Description: IS285 Location: 178704-179868 bp Feature: domain Description: IS285 Location: 1 78704-1 79868 bp Feature: gene Location: 181479-182750 bp Ori: ABI67510.1 Feature: domain Description: YdhJ Location: 181494-182721 bp Feature: domain Description: YdhJ Location: 1 81 494-1 82721 bp Feature: gene Location: 192896-193759 bp Ori: ABI67516.1 Feature: domain Description: Y1_Tnp Location: 192932-193271 bp Feature: domain Description: Y1 _Tnp Location: 1 92932-1 93271 bp Feature: gene Location: 193994-196540 bp Ori: ABI67517.1 Feature: domain Description: PQQ Location: 194201-194324 bp Feature: domain Description: PQQ Location: 1 94201 -1 94324 bp Feature: domain Description: PQQ_2 Location: 194453-195053 bp Feature: domain Description: PQQ_2 Location: 1 94453-1 95053 bp Feature: domain Description: CHB_HEX_C_1 Location: 195305-195497 bp Feature: domain Description: CHB_HEX_C_1 Location: 1 95305-1 95497 bp Feature: domain Description: swm_rep_I Location: 195950-196145 bp Feature: domain Description: swm_rep_I Location: 1 95950-1 961 45 bp Feature: domain Description: Big_5 Location: 196253-196466 bp Feature: domain Description: Big_5 Location: 1 96253-1 96466 bp Feature: gene Location: 197015-198346 bp Ori: ABI67518.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197270-197963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97270-1 97963 bp Feature: domain Description: GIIM Note: maturase Location: 198047-198251 bp Feature: domain Description: GIIM Note: maturase Location: 1 98047-1 98251 bp Feature: gene Location: 198584-198691 bp Feature: gene Location: 198928-200622 bp Ori: ABI67520.1 Feature: domain Description: CtpA Location: 199087-200050 bp Feature: domain Description: CtpA Location: 1 99087-200050 bp Feature: domain Description: Big_5 Location: 200347-200542 bp Feature: domain Description: Big_5 Location: 200347-200542 bp Feature: gene Location: 216789-219893 bp Ori: ABI67528.1 Feature: domain Description: AcrB Location: 216798-219861 bp Feature: domain Description: AcrB Location: 21 6798-21 9861 bp Feature: gene Location: 219971-220543 bp Ori: ABI67529.1 Feature: domain Description: AcrR Location: 219983-220526 bp Feature: domain Description: AcrR Location: 21 9983-220526 bp Feature: gene Location: 221066-222397 bp Ori: ABI67530.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221321-222014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 321 -22201 4 bp Feature: domain Description: GIIM Note: maturase Location: 222098-222302 bp Feature: domain Description: GIIM Note: maturase Location: 222098-222302 bp Feature: gene Location: 222632-223636 bp Ori: ABI67531.1 Feature: domain Description: PRK03598 Location: 222653-223628 bp Feature: domain Description: PRK03598 Location: 222653-223628 bp Feature: gene Location: 223639-224355 bp Ori: ABI67532.1 Feature: domain Description: CcmA Location: 223660-224191 bp Feature: domain Description: CcmA Location: 223660-2241 91 bp Feature: gene Location: 354930-356270 bp Feature: gene Location: 356311-361947 bp Ori: ABI67646.1 Feature: domain Description: YprA Location: 356317-357427 bp Feature: domain Description: YprA Location: 35631 7-357427 bp Feature: domain Description: YprA Location: 359839-360100 bp Feature: domain Description: YprA Location: 359839-3601 00 bp Feature: gene Location: 362840-364171 bp Ori: ABI67647.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363095-363788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363095-363788 bp Feature: domain Description: GIIM Note: maturase Location: 363872-364076 bp Feature: domain Description: GIIM Note: maturase Location: 363872-364076 bp Feature: gene Location: 364833-366410 bp Ori: ABI67648.1 Feature: domain Description: YSH1 Location: 364836-366219 bp Feature: domain Description: YSH1 Location: 364836-36621 9 bp Feature: gene Location: 366580-368328 bp Ori: ABI67649.1 Feature: domain Description: RocR Location: 366619-366973 bp Feature: domain Description: RocR Location: 36661 9-366973 bp Feature: domain Description: PAS Location: 367015-367153 bp Feature: domain Description: PAS Location: 36701 5-3671 53 bp Feature: domain Description: FhlA Location: 367294-368320 bp Feature: domain Description: FhlA Location: 367294-368320 bp Feature: gene Location: 1174658-1175419 bp Ori: ABI68347.1 Feature: domain Description: SIR2_Af2 Location: 1174694-1175357 bp Feature: domain Description: SIR2_Af2 Location: 1 1 74694-1 1 75357 bp Feature: gene Location: 1175740-1176693 bp Ori: ABI68348.1 Feature: domain Description: NLPC_P60 Location: 1176208-1176496 bp Feature: domain Description: NLPC_P60 Location: 1 1 76208-1 1 76496 bp Feature: gene Location: 1177188-1178636 bp Ori: ABI68349.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1177581-1178196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 77581 -1 1 781 96 bp Feature: domain Description: GIIM Note: maturase Location: 1178250-1178472 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 78250-1 1 78472 bp Feature: gene Location: 1178910-1179794 bp Ori: ABI68350.1 Feature: domain Description: SMODS Location: 1178934-1179411 bp Feature: domain Description: SMODS Location: 1 1 78934-1 1 7941 1 bp Feature: gene Location: 1180211-1181638 bp Ori: ABI68351.1 Feature: domain Description: COG4870 Location: 1180289-1181219 bp Feature: domain Description: COG4870 Location: 1 1 80289-1 1 81 21 9 bp Feature: gene Location: 1441661-1442446 bp Ori: ABI68560.1 Feature: domain Description: YmdB Location: 1441673-1442426 bp Feature: domain Description: YmdB Location: 1 441 673-1 442426 bp Feature: gene Location: 1442461-1442952 bp Feature: gene Location: 1443157-1444605 bp Ori: ABI68562.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1443550-1444165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 443550-1 4441 65 bp Feature: domain Description: GIIM Note: maturase Location: 1444219-1444441 bp Feature: domain Description: GIIM Note: maturase Location: 1 44421 9-1 444441 bp Feature: gene Location: 1445059-1446606 bp Ori: ABI68563.1 Feature: domain Description: RNase_Y Location: 1445089-1446604 bp Feature: domain Description: RNase_Y Location: 1 445089-1 446604 bp Feature: gene Location: 1447035-1448069 bp Ori: ABI68564.1 Feature: domain Description: recA Location: 1447053-1448040 bp Feature: domain Description: recA Location: 1 447053-1 448040 bp Feature: gene Location: 1941894-1942118 bp Ori: ABI69005.1 Feature: domain Description: ThiS Location: 1941909-1942116 bp Feature: domain Description: ThiS Location: 1 941 909-1 9421 1 6 bp Feature: gene Location: 1942208-1942426 bp Ori: ABI69006.1 Feature: domain Description: DUF3006 Location: 1942217-1942418 bp Feature: domain Description: DUF3006 Location: 1 94221 7-1 94241 8 bp Feature: gene Location: 1942747-1944078 bp Ori: ABI69007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1943002-1943695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 943002-1 943695 bp Feature: domain Description: GIIM Note: maturase Location: 1943779-1943983 bp Feature: domain Description: GIIM Note: maturase Location: 1 943779-1 943983 bp Feature: gene Location: 1944553-1945725 bp Ori: ABI69008.1 Feature: domain Description: ComEC Location: 1944559-1945459 bp Feature: domain Description: ComEC Location: 1 944559-1 945459 bp Feature: domain Description: Ada_Zn_binding Location: 1945528-1945666 bp Feature: domain Description: Ada_Zn_binding Location: 1 945528-1 945666 bp Feature: gene Location: 1946085-1946684 bp Ori: ABI69009.1 Feature: domain Description: SodA Location: 1946088-1946667 bp Feature: domain Description: SodA Location: 1 946088-1 946667 bp Feature: gene Location: 2166665-2167054 bp Ori: ABI69204.1 Feature: domain Description: dut Location: 2166677-2167043 bp Feature: domain Description: dut Location: 21 66677-21 67043 bp Feature: gene Location: 2167655-2169997 bp Ori: ABI69205.1 Feature: domain Description: DPG_synthase Location: 2167676-2168291 bp Feature: domain Description: DPG_synthase Location: 21 67676-21 68291 bp Feature: domain Description: PMT_2 Location: 2168573-2169011 bp Feature: domain Description: PMT_2 Location: 21 68573-21 6901 1 bp Feature: gene Location: 2170202-2171533 bp Ori: ABI69206.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2170457-2171150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 70457-21 71 1 50 bp Feature: domain Description: GIIM Note: maturase Location: 2171234-2171438 bp Feature: domain Description: GIIM Note: maturase Location: 21 71 234-21 71 438 bp Feature: gene Location: 2172050-2172811 bp Ori: ABI69207.1 Feature: domain Description: fabG Location: 2172074-2172803 bp Feature: domain Description: fabG Location: 21 72074-21 72803 bp Feature: gene Location: 2173524-2174117 bp Ori: ABI69208.1 Feature: domain Description: SatP Location: 2173545-2174100 bp Feature: domain Description: SatP Location: 21 73545-21 741 00 bp Feature: gene Location: 2253424-2253822 bp Ori: ABI69271.1 Feature: domain Description: COG1569 Location: 2253427-2253817 bp Feature: domain Description: COG1 569 Location: 2253427-225381 7 bp Feature: gene Location: 2253806-2254081 bp Ori: ABI69272.1 Feature: domain Description: AbrB Location: 2253812-2254025 bp Feature: domain Description: AbrB Location: 225381 2-2254025 bp Feature: gene Location: 2254331-2255779 bp Ori: ABI69273.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2254724-2255339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2254724-2255339 bp Feature: domain Description: GIIM Note: maturase Location: 2255393-2255615 bp Feature: domain Description: GIIM Note: maturase Location: 2255393-225561 5 bp Feature: gene Location: 2256192-2257580 bp Ori: ABI69274.1 Feature: domain Description: lipoamide_DH Location: 2256198-2257560 bp Feature: domain Description: lipoamide_DH Location: 22561 98-2257560 bp Feature: gene Location: 2258013-2259473 bp Ori: ABI69275.1 Feature: domain Description: PRK04366 Location: 2258019-2259453 bp Feature: domain Description: PRK04366 Location: 225801 9-2259453 bp Feature: gene Location: 2385000-2387507 bp Ori: ABI69368.1 Feature: domain Description: PRK04914 Location: 2385228-2385891 bp Feature: domain Description: PRK0491 4 Location: 2385228-2385891 bp Feature: domain Description: PRK04914 Location: 2386482-2386884 bp Feature: domain Description: PRK0491 4 Location: 2386482-2386884 bp Feature: gene Location: 2388129-2388380 bp Ori: ABI69369.1 Feature: domain Description: pepcterm_ATPase Location: 2388135-2388366 bp Feature: domain Description: pepcterm_ATPase Location: 23881 35-2388366 bp Feature: gene Location: 2388762-2390579 bp Ori: ABI69370.1 Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 2389185-2389653 bp Feature: RT Description: RVT-UG1 3 Note: UG1 3 RT Location: 23891 85-2389653 bp Feature: gene Location: 2390684-2391811 bp Feature: gene Location: 2392520-2393332 bp Ori: ABI69372.1 Feature: domain Description: PHA02517 Location: 2392571-2393318 bp Feature: domain Description: PHA0251 7 Location: 2392571 -239331 8 bp Feature: gene Location: 2792183-2792482 bp Feature: gene Location: 2792609-2793454 bp Ori: ABI69751.1 Feature: domain Description: napH Location: 2792768-2793005 bp Feature: domain Description: napH Location: 2792768-2793005 bp Feature: domain Description: napH Location: 2793113-2793416 bp Feature: domain Description: napH Location: 27931 1 3-279341 6 bp Feature: gene Location: 2793872-2795203 bp Ori: ABI69752.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2794127-2794820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27941 27-2794820 bp Feature: domain Description: GIIM Note: maturase Location: 2794904-2795108 bp Feature: domain Description: GIIM Note: maturase Location: 2794904-27951 08 bp Feature: gene Location: 2796000-2796314 bp Ori: ABI69753.1 Feature: domain Description: PRK12856 Location: 2796003-2796306 bp Feature: domain Description: PRK1 2856 Location: 2796003-2796306 bp Feature: gene Location: 2796539-2797759 bp Ori: ABI69754.1 Feature: domain Description: DUF772 Location: 2796683-2796905 bp Feature: domain Description: DUF772 Location: 2796683-2796905 bp Feature: domain Description: DDE_Tnp_1 Location: 2796953-2797700 bp Feature: domain Description: DDE_Tnp_1 Location: 2796953-2797700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NT_KNTase_like (cd05403), RVT-GII, GIIM (pfam08388), Transposase_31 (pfam04754), RAYT (COG1943), DDE_Tnp_1_6 (pfam13751), BeeE (COG4695), IS285 (COG3328), YdhJ (COG1078), Y1_Tnp (pfam01797)
PQQ (smart00564), PQQ_2 (pfam13360), CHB_HEX_C_1 (pfam13290), swm_rep_I (TIGR02059), Big_5 (pfam13205), CtpA (COG0793), AcrB (COG0841), AcrR (COG1309), PRK03598 (putative efflux pump membrane fusion protein; Provisional), CcmA (COG4133)
YprA (COG1205), YSH1 (COG1236), RocR (COG3829), PAS (smart00091), FhlA (COG3604), SIR2_Af2 (cd01413), NLPC_P60 (pfam00877), SMODS (pfam18144), COG4870 (Cysteine protease, C1A family ), YmdB (pfam13277)
RNase_Y (TIGR03319), recA (PRK09519), ThiS (pfam02597), DUF3006 (pfam11213), ComEC (COG2333), Ada_Zn_binding (pfam02805), SodA (COG0605), dut (TIGR00576), DPG_synthase (cd04188), PMT_2 (pfam13231)
fabG (PRK12825), SatP (COG1584), COG1569 (Predicted nucleic acid-binding protein, contains PIN domain ), AbrB (pfam05145), lipoamide_DH (TIGR01350), PRK04366 (aminomethyl-transferring glycine dehydrogenase subunit GcvPB), PRK04914 (RNA polymerase-associated protein RapA), pepcterm_ATPase (TIGR03015), RVT-UG13, PHA02517 (putative transposase OrfB; Reviewed)
napH (PRK09477), PRK12856 (hypothetical protein; Provisional), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609)