myRT

myRT report for GCA_000014865.1_ASM1486v1

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Seq: CP000471.1 Magnetococcus marinus MC-1, complete genome (4719581 bp)
Overview 1 RT 1: 784758-788043 bp 2 RT 2: 1412912-1415986 bp 3 RT 3: 2453116-2466639 bp 4 RT 4: 3420616-3423119 bp Neighborhood of RT #1 [784758, 788078] InsE PHA02517 RVT-GII GIIM rve_2 TnpB_IS66 Neighborhood of RT #2 [1412912, 1416114] PHA02517 InsE RVT-GII GIIM rve_2 HTH_32 Neighborhood of RT #3 [2453116, 2466647] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM PHA02517 DDE_Tnp_1 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII GIIM TnpB_IS66 InsE Neighborhood of RT #4 [3420616, 3423119] RVT_N RVT-GII GIIM rve_3 Feature: gene Location: 784758-785051 bp Ori: ABK43172.1 Feature: domain Description: InsE Location: 784761-785043 bp Feature: domain Description: InsE Location: 784761 -785043 bp Feature: gene Location: 785048-785830 bp Ori: ABK43173.1 Feature: domain Description: PHA02517 Location: 785114-785738 bp Feature: domain Description: PHA0251 7 Location: 7851 1 4-785738 bp Feature: gene Location: 786252-787505 bp Ori: ABK43174.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 786456-787113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 786456-7871 1 3 bp Feature: domain Description: GIIM Note: maturase Location: 787194-787416 bp Feature: domain Description: GIIM Note: maturase Location: 7871 94-78741 6 bp Feature: gene Location: 787544-787759 bp Ori: ABK43175.1 Feature: domain Description: rve_2 Location: 787580-787739 bp Feature: domain Description: rve_2 Location: 787580-787739 bp Feature: gene Location: 787776-788078 bp Ori: ABK43176.1 Feature: domain Description: TnpB_IS66 Location: 787791-788043 bp Feature: domain Description: TnpB_IS66 Location: 787791 -788043 bp Feature: gene Location: 1412912-1413781 bp Ori: ABK43642.1 Feature: domain Description: PHA02517 Location: 1412978-1413776 bp Feature: domain Description: PHA0251 7 Location: 1 41 2978-1 41 3776 bp Feature: gene Location: 1413778-1414071 bp Ori: ABK43643.1 Feature: domain Description: InsE Location: 1413781-1414063 bp Feature: domain Description: InsE Location: 1 41 3781 -1 41 4063 bp Feature: gene Location: 1414112-1415164 bp Ori: ABK43644.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414145-1414772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 41 45-1 41 4772 bp Feature: domain Description: GIIM Note: maturase Location: 1414853-1415075 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 4853-1 41 5075 bp Feature: gene Location: 1415203-1415418 bp Ori: ABK43645.1 Feature: domain Description: rve_2 Location: 1415239-1415398 bp Feature: domain Description: rve_2 Location: 1 41 5239-1 41 5398 bp Feature: gene Location: 1415599-1416114 bp Ori: ABK43646.1 Feature: domain Description: HTH_32 Location: 1415791-1415986 bp Feature: domain Description: HTH_32 Location: 1 41 5791 -1 41 5986 bp Feature: gene Location: 2453116-2453475 bp Ori: ABK44479.1 Feature: domain Description: TnpB_IS66 Location: 2453149-2453440 bp Feature: domain Description: TnpB_IS66 Location: 24531 49-2453440 bp Feature: gene Location: 2453511-2455091 bp Ori: ABK44480.1 Feature: domain Description: LZ_Tnp_IS66 Location: 2453640-2453853 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2453640-2453853 bp Feature: domain Description: zf-IS66 Location: 2453883-2454009 bp Feature: domain Description: zf-IS66 Location: 2453883-2454009 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2454057-2454924 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2454057-2454924 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2454945-2455059 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2454945-2455059 bp Feature: gene Location: 2455836-2457089 bp Ori: ABK44481.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2456040-2456697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2456040-2456697 bp Feature: domain Description: GIIM Note: maturase Location: 2456778-2457000 bp Feature: domain Description: GIIM Note: maturase Location: 2456778-2457000 bp Feature: gene Location: 2457511-2458320 bp Ori: ABK44482.1 Feature: domain Description: PHA02517 Location: 2457604-2458225 bp Feature: domain Description: PHA0251 7 Location: 2457604-2458225 bp Feature: gene Location: 2458573-2460471 bp Ori: ABK44483.1 Feature: domain Description: DDE_Tnp_1 Location: 2459347-2460238 bp Feature: domain Description: DDE_Tnp_1 Location: 2459347-2460238 bp Feature: gene Location: 2460760-2461668 bp Ori: ABK44484.1 Feature: domain Description: DDE_Tnp_IS66 Location: 2460796-2461501 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2460796-2461 501 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2461522-2461636 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2461 522-2461 636 bp Feature: gene Location: 2461745-2462062 bp Ori: ABK44485.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2461949-2462054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2461 949-2462054 bp Feature: gene Location: 2462215-2463795 bp Ori: ABK44486.1 Feature: domain Description: LZ_Tnp_IS66 Location: 2462344-2462557 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2462344-2462557 bp Feature: domain Description: zf-IS66 Location: 2462587-2462713 bp Feature: domain Description: zf-IS66 Location: 2462587-246271 3 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2462761-2463628 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2462761 -2463628 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2463649-2463763 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2463649-2463763 bp Feature: gene Location: 2463831-2464034 bp Ori: ABK44487.1 Feature: domain Description: TnpB_IS66 Location: 2463882-2463999 bp Feature: domain Description: TnpB_IS66 Location: 2463882-2463999 bp Feature: gene Location: 2464162-2465463 bp Ori: ABK44488.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2464447-2465083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2464447-2465083 bp Feature: domain Description: GIIM Note: maturase Location: 2465158-2465377 bp Feature: domain Description: GIIM Note: maturase Location: 24651 58-2465377 bp Feature: gene Location: 2465921-2466181 bp Ori: ABK44489.1 Feature: domain Description: TnpB_IS66 Location: 2465954-2466143 bp Feature: domain Description: TnpB_IS66 Location: 2465954-24661 43 bp Feature: gene Location: 2466354-2466647 bp Ori: ABK44490.1 Feature: domain Description: InsE Location: 2466357-2466639 bp Feature: domain Description: InsE Location: 2466357-2466639 bp Feature: gene Location: 3420616-3422127 bp Ori: ABK45198.1 Feature: domain Description: RVT_N Location: 3420697-3420940 bp Feature: domain Description: RVT_N Location: 3420697-3420940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3420985-3421630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3420985-3421 630 bp Feature: domain Description: GIIM Note: maturase Location: 3421684-3421915 bp Feature: domain Description: GIIM Note: maturase Location: 3421 684-3421 91 5 bp Feature: gene Location: 3422194-3422739 bp Ori: ABK45199.1 Feature: domain Description: rve_3 Location: 3422455-3422626 bp Feature: domain Description: rve_3 Location: 3422455-3422626 bp Feature: gene Location: 3422784-3423119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), TnpB_IS66 (pfam05717), HTH_32 (pfam13565), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)
DDE_Tnp_IS66_C (pfam13817), DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), rve_3 (pfam13683)