myRT

myRT report for GCA_000014885.1_ASM1488v1

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Seq: CP000472.1 Shewanella piezotolerans WP3, complete genome (5396476 bp)
Overview 1 RT 1: 1190218-1194727 bp 2 RT 2: 3475437-3482946 bp 3 RT 3: 3628895-3634781 bp 4 RT 4: 3907915-3913461 bp 5 RT 5: 4963317-4971563 bp 6 RT 6: 5131133-5139352 bp 7 RT 7: 5323270-5328668 bp Neighborhood of RT #1 [1190218, 1194732] SUKH_5 RVT_N RVT-GII AzgA Neighborhood of RT #2 [3475437, 3482978] BioC RVT_N RVT-GII GIIM PGM2 RluA Neighborhood of RT #3 [3628895, 3634795] RVT_N RVT-GII GIIM PrpE HTH_GnyR Neighborhood of RT #4 [3907915, 3913484] RVT_N RVT-GII MFS_FucP_like Neighborhood of RT #5 [4963317, 4972861] PRK10826 RVT_N RVT-GII GIIM PepO RssA Neighborhood of RT #6 [5131133, 5139369] LemA AbgT RVT_N RVT-GII GIIM COG3547 Neighborhood of RT #7 [5323270, 5328709] PRK09637 KOG0406 RVT_N RVT-GII FlgN Feature: gene Location: 1190218-1190589 bp Ori: ACJ27982.1 Feature: domain Description: SUKH_5 Location: 1190242-1190569 bp Feature: domain Description: SUKH_5 Location: 1 1 90242-1 1 90569 bp Feature: gene Location: 1190582-1190692 bp Feature: gene Location: 1191366-1192478 bp Ori: ACJ27984.1 Feature: domain Description: RVT_N Location: 1191414-1191657 bp Feature: domain Description: RVT_N Location: 1 1 91 41 4-1 1 91 657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1191702-1192329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 91 702-1 1 92329 bp Feature: gene Location: 1192596-1192838 bp Feature: gene Location: 1193443-1194732 bp Ori: ACJ27986.1 Feature: domain Description: AzgA Location: 1193446-1194727 bp Feature: domain Description: AzgA Location: 1 1 93446-1 1 94727 bp Feature: gene Location: 3475437-3476072 bp Ori: ACJ29998.1 Feature: domain Description: BioC Location: 3475560-3476007 bp Feature: domain Description: BioC Location: 3475560-3476007 bp Feature: gene Location: 3476780-3477187 bp Feature: gene Location: 3478198-3479670 bp Ori: ACJ30000.1 Feature: domain Description: RVT_N Location: 3478246-3478489 bp Feature: domain Description: RVT_N Location: 3478246-3478489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3478534-3479161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3478534-34791 61 bp Feature: domain Description: GIIM Note: maturase Location: 3479218-3479446 bp Feature: domain Description: GIIM Note: maturase Location: 347921 8-3479446 bp Feature: gene Location: 3480096-3481817 bp Ori: ACJ30001.1 Feature: domain Description: PGM2 Location: 3480228-3481767 bp Feature: domain Description: PGM2 Location: 3480228-3481 767 bp Feature: gene Location: 3482133-3482978 bp Ori: ACJ30002.1 Feature: domain Description: RluA Location: 3482199-3482946 bp Feature: domain Description: RluA Location: 34821 99-3482946 bp Feature: gene Location: 3628895-3629023 bp Feature: gene Location: 3629439-3629555 bp Feature: gene Location: 3630264-3631736 bp Ori: ACJ30138.1 Feature: domain Description: RVT_N Location: 3630312-3630555 bp Feature: domain Description: RVT_N Location: 363031 2-3630555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3630600-3631227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3630600-3631 227 bp Feature: domain Description: GIIM Note: maturase Location: 3631284-3631512 bp Feature: domain Description: GIIM Note: maturase Location: 3631 284-3631 51 2 bp Feature: gene Location: 3632143-3634047 bp Ori: ACJ30139.1 Feature: domain Description: PrpE Location: 3632164-3634000 bp Feature: domain Description: PrpE Location: 36321 64-3634000 bp Feature: gene Location: 3634367-3634795 bp Ori: ACJ30140.1 Feature: domain Description: HTH_GnyR Location: 3634433-3634781 bp Feature: domain Description: HTH_GnyR Location: 3634433-3634781 bp Feature: gene Location: 3907915-3908385 bp Feature: gene Location: 3908530-3908973 bp Feature: gene Location: 3909715-3910827 bp Ori: ACJ30382.1 Feature: domain Description: RVT_N Location: 3909763-3910006 bp Feature: domain Description: RVT_N Location: 3909763-391 0006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3910051-3910678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391 0051 -391 0678 bp Feature: gene Location: 3910945-3911187 bp Feature: gene Location: 3912171-3913484 bp Ori: ACJ30384.1 Feature: domain Description: MFS_FucP_like Location: 3912228-3913461 bp Feature: domain Description: MFS_FucP_like Location: 391 2228-391 3461 bp Feature: gene Location: 4963317-4963982 bp Ori: ACJ31373.1 Feature: domain Description: PRK10826 Location: 4963323-4963965 bp Feature: domain Description: PRK1 0826 Location: 4963323-4963965 bp Feature: gene Location: 4964584-4965492 bp Feature: gene Location: 4966609-4968081 bp Ori: ACJ31375.1 Feature: domain Description: RVT_N Location: 4966657-4966900 bp Feature: domain Description: RVT_N Location: 4966657-4966900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4966945-4967572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4966945-4967572 bp Feature: domain Description: GIIM Note: maturase Location: 4967629-4967857 bp Feature: domain Description: GIIM Note: maturase Location: 4967629-4967857 bp Feature: gene Location: 4968443-4970500 bp Ori: ACJ31376.1 Feature: domain Description: PepO Location: 4968548-4970498 bp Feature: domain Description: PepO Location: 4968548-4970498 bp Feature: gene Location: 4970645-4972861 bp Ori: ACJ31377.1 Feature: domain Description: RssA Location: 4970705-4971563 bp Feature: domain Description: RssA Location: 4970705-4971 563 bp Feature: gene Location: 5131133-5131702 bp Ori: ACJ31529.1 Feature: domain Description: LemA Location: 5131160-5131670 bp Feature: domain Description: LemA Location: 51 31 1 60-51 31 670 bp Feature: gene Location: 5133354-5134973 bp Ori: ACJ31530.1 Feature: domain Description: AbgT Location: 5133414-5134968 bp Feature: domain Description: AbgT Location: 51 3341 4-51 34968 bp Feature: gene Location: 5135625-5137097 bp Ori: ACJ31531.1 Feature: domain Description: RVT_N Location: 5135673-5135916 bp Feature: domain Description: RVT_N Location: 51 35673-51 3591 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5135961-5136588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 35961 -51 36588 bp Feature: domain Description: GIIM Note: maturase Location: 5136645-5136873 bp Feature: domain Description: GIIM Note: maturase Location: 51 36645-51 36873 bp Feature: gene Location: 5137862-5138161 bp Feature: gene Location: 5138419-5139369 bp Ori: ACJ31533.1 Feature: domain Description: COG3547 Location: 5138452-5139352 bp Feature: domain Description: COG3547 Location: 51 38452-51 39352 bp Feature: gene Location: 5323270-5323812 bp Ori: ACJ31713.1 Feature: domain Description: PRK09637 Location: 5323273-5323810 bp Feature: domain Description: PRK09637 Location: 5323273-532381 0 bp Feature: gene Location: 5323880-5324593 bp Ori: ACJ31714.1 Feature: domain Description: KOG0406 Location: 5323886-5324483 bp Feature: domain Description: KOG0406 Location: 5323886-5324483 bp Feature: gene Location: 5326435-5327547 bp Ori: ACJ31715.1 Feature: domain Description: RVT_N Location: 5326483-5326726 bp Feature: domain Description: RVT_N Location: 5326483-5326726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5326771-5327398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5326771 -5327398 bp Feature: gene Location: 5327665-5327907 bp Feature: gene Location: 5328251-5328709 bp Ori: ACJ31717.1 Feature: domain Description: FlgN Location: 5328296-5328668 bp Feature: domain Description: FlgN Location: 5328296-5328668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUKH_5 (pfam14567), RVT_N (pfam13655), RVT-GII, AzgA (COG2252), BioC (TIGR02072), GIIM (pfam08388), PGM2 (cd05799), RluA (COG0564), PrpE (cd05967), HTH_GnyR (cd04776)
MFS_FucP_like (cd17394), PRK10826 (hexitol phosphatase HxpB), PepO (COG3590), RssA (COG1752), LemA (pfam04011), AbgT (COG2978), COG3547 (Transposase ), PRK09637 (RNA polymerase sigma factor SigZ; Provisional), KOG0406 (KOG0406, Glutathione S-transferase ), FlgN (pfam05130)