myRT

myRT report for GCA_000015125.1_ASM1512v1

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Seq: CP000492.1 Chlorobium phaeobacteroides DSM 266, complete genome (3133902 bp)
Overview 1 RT 1: 503165-511924 bp 2 RT 2: 1675786-1688213 bp 3 RT 3: 1930889-1938912 bp 4 RT 4: 2379403-2381885 bp 5 RT 5: 2539718-2544775 bp 6 RT 6: 3011339-3017739 bp Neighborhood of RT #1 [503165, 512001] COG5635 pfam03781 Avd_like RVT-DGRs COG5635 pfam03781 HTH_ARSR Neighborhood of RT #2 [1675786, 1688254] HTH_29 RicinB_lectin_2 Toxin_10 RVT-GII GIIM COG4584 COG4584 IstB_IS21 RAYT RVT-GII RAYT HTH_ARSR DUF4325 Neighborhood of RT #3 [1930889, 1938947] COG2865 nitrilase group_II_RT_mat RVT-UG6 dnaG RMtype1_S_HinAWORF1578P-TRD2-CR2_like RMtype1_S_HinAWORF1578P-TRD2-CR2_like Neighborhood of RT #4 [2379403, 2381923] RVT-CRISPR Cas_Cas1 Cas2_I_II_III Neighborhood of RT #5 [2539718, 2544792] COG4584 COG4584 Y1_Tnp RVT-GII Y1_Tnp Neighborhood of RT #6 [3011339, 3017762] HTH_32 DDE_3 RVT-GII DDE_Tnp_1_4 GT4_WcaC-like Feature: gene Location: 503165-506314 bp Ori: ABL64515.1 Feature: domain Description: COG5635 Location: 503834-505076 bp Feature: domain Description: COG5635 Location: 503834-505076 bp Feature: domain Description: pfam03781 Location: 505520-506297 bp Feature: domain Description: pfam03781 Location: 505520-506297 bp Feature: gene Location: 506372-506692 bp Ori: ABL64516.1 Feature: domain Description: Avd_like Location: 506381-506687 bp Feature: domain Description: Avd_like Location: 506381 -506687 bp Feature: gene Location: 507049-508080 bp Ori: ABL64517.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 507259-507898 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 507259-507898 bp Feature: gene Location: 508115-511012 bp Ori: ABL64518.1 Feature: domain Description: COG5635 Location: 508607-509831 bp Feature: domain Description: COG5635 Location: 508607-509831 bp Feature: domain Description: pfam03781 Location: 510245-510995 bp Feature: domain Description: pfam03781 Location: 51 0245-51 0995 bp Feature: gene Location: 511666-512001 bp Ori: ABL64519.1 Feature: domain Description: HTH_ARSR Location: 511732-511924 bp Feature: domain Description: HTH_ARSR Location: 51 1 732-51 1 924 bp Feature: gene Location: 1675786-1676220 bp Ori: ABL65505.1 Feature: domain Description: HTH_29 Location: 1675888-1676086 bp Feature: domain Description: HTH_29 Location: 1 675888-1 676086 bp Feature: gene Location: 1677027-1678238 bp Ori: ABL65506.1 Feature: domain Description: RicinB_lectin_2 Location: 1677312-1677447 bp Feature: domain Description: RicinB_lectin_2 Location: 1 67731 2-1 677447 bp Feature: domain Description: Toxin_10 Location: 1677651-1678206 bp Feature: domain Description: Toxin_1 0 Location: 1 677651 -1 678206 bp Feature: gene Location: 1678623-1679879 bp Ori: ABL65507.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1678821-1679478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 678821 -1 679478 bp Feature: domain Description: GIIM Note: maturase Location: 1679556-1679778 bp Feature: domain Description: GIIM Note: maturase Location: 1 679556-1 679778 bp Feature: gene Location: 1680674-1682248 bp Ori: ABL65508.1 Feature: domain Description: COG4584 Location: 1680971-1681613 bp Feature: domain Description: COG4584 Location: 1 680971 -1 681 61 3 bp Feature: domain Description: COG4584 Location: 1681856-1682129 bp Feature: domain Description: COG4584 Location: 1 681 856-1 6821 29 bp Feature: gene Location: 1682263-1683009 bp Ori: ABL65509.1 Feature: domain Description: IstB_IS21 Location: 1682434-1682956 bp Feature: domain Description: IstB_IS21 Location: 1 682434-1 682956 bp Feature: gene Location: 1683110-1683997 bp Ori: ABL65510.1 Feature: domain Description: RAYT Location: 1683140-1683512 bp Feature: domain Description: RAYT Location: 1 6831 40-1 68351 2 bp Feature: gene Location: 1684063-1684833 bp Ori: ABL65511.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1684474-1684786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 684474-1 684786 bp Feature: gene Location: 1685483-1686454 bp Ori: ABL65512.1 Feature: domain Description: RAYT Location: 1685513-1685885 bp Feature: domain Description: RAYT Location: 1 68551 3-1 685885 bp Feature: gene Location: 1687238-1688254 bp Ori: ABL65513.1 Feature: domain Description: HTH_ARSR Location: 1687310-1687412 bp Feature: domain Description: HTH_ARSR Location: 1 68731 0-1 68741 2 bp Feature: domain Description: DUF4325 Location: 1688057-1688213 bp Feature: domain Description: DUF4325 Location: 1 688057-1 68821 3 bp Feature: gene Location: 1930889-1932331 bp Ori: ABL65724.1 Feature: domain Description: COG2865 Location: 1930895-1932254 bp Feature: domain Description: COG2865 Location: 1 930895-1 932254 bp Feature: gene Location: 1932519-1933415 bp Ori: ABL65725.1 Feature: domain Description: nitrilase Location: 1932642-1933308 bp Feature: domain Description: nitrilase Location: 1 932642-1 933308 bp Feature: gene Location: 1933405-1936650 bp Ori: ABL65726.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1933441-1933771 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 933441 -1 933771 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 1934056-1934500 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 1 934056-1 934500 bp Feature: gene Location: 1936647-1937699 bp Ori: ABL65727.1 Feature: domain Description: dnaG Location: 1936740-1937694 bp Feature: domain Description: dnaG Location: 1 936740-1 937694 bp Feature: gene Location: 1937703-1938947 bp Ori: ABL65728.1 Feature: domain Description: RMtype1_S_HinAWORF1578P-TRD2-CR2_like Location: 1937814-1938357 bp Feature: domain Description: RMtype1 _S_HinAWORF1 578P-TRD2-CR2_like Location: 1 93781 4-1 938357 bp Feature: domain Description: RMtype1_S_HinAWORF1578P-TRD2-CR2_like Location: 1938678-1938912 bp Feature: domain Description: RMtype1 _S_HinAWORF1 578P-TRD2-CR2_like Location: 1 938678-1 93891 2 bp Feature: gene Location: 2379403-2381598 bp Ori: ABL66066.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2379613-2380219 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 237961 3-238021 9 bp Feature: domain Description: Cas_Cas1 Location: 2380579-2381455 bp Feature: domain Description: Cas_Cas1 Location: 2380579-2381 455 bp Feature: gene Location: 2381639-2381923 bp Ori: ABL66067.1 Feature: domain Description: Cas2_I_II_III Location: 2381651-2381885 bp Feature: domain Description: Cas2_I_II_III Location: 2381 651 -2381 885 bp Feature: gene Location: 2539718-2541289 bp Ori: ABL66211.1 Feature: domain Description: COG4584 Location: 2539772-2539943 bp Feature: domain Description: COG4584 Location: 2539772-2539943 bp Feature: domain Description: COG4584 Location: 2540105-2540612 bp Feature: domain Description: COG4584 Location: 25401 05-254061 2 bp Feature: gene Location: 2541845-2542810 bp Ori: ABL66212.1 Feature: domain Description: Y1_Tnp Location: 2541887-2542208 bp Feature: domain Description: Y1 _Tnp Location: 2541 887-2542208 bp Feature: gene Location: 2542907-2544001 bp Ori: ABL66213.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2543342-2543951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2543342-2543951 bp Feature: gene Location: 2544294-2544494 bp Feature: gene Location: 2544574-2544792 bp Ori: ABL66215.1 Feature: domain Description: Y1_Tnp Location: 2544616-2544775 bp Feature: domain Description: Y1 _Tnp Location: 254461 6-2544775 bp Feature: gene Location: 3011339-3011815 bp Ori: ABL66612.1 Feature: domain Description: HTH_32 Location: 3011537-3011777 bp Feature: domain Description: HTH_32 Location: 301 1 537-301 1 777 bp Feature: gene Location: 3011910-3012470 bp Ori: ABL66613.1 Feature: domain Description: DDE_3 Location: 3011922-3012354 bp Feature: domain Description: DDE_3 Location: 301 1 922-301 2354 bp Feature: gene Location: 3012714-3014195 bp Ori: ABL66614.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3013125-3013815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 31 25-301 381 5 bp Feature: gene Location: 3014774-3016171 bp Ori: ABL66615.1 Feature: domain Description: DDE_Tnp_1_4 Location: 3014846-3016130 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 301 4846-301 61 30 bp Feature: gene Location: 3016560-3017762 bp Ori: ABL66616.1 Feature: domain Description: GT4_WcaC-like Location: 3016572-3017739 bp Feature: domain Description: GT4_WcaC-like Location: 301 6572-301 7739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs, HTH_ARSR (smart00418), HTH_29 (pfam13551), RicinB_lectin_2 (pfam14200), Toxin_10 (pfam05431), RVT-GII, GIIM (pfam08388)
COG4584 (Transposase ), IstB_IS21 (pfam01695), RAYT (COG1943), DUF4325 (pfam14213), COG2865 (Predicted transcriptional regulator, contains HTH domain ), nitrilase (cl11424), group_II_RT_mat (TIGR04416), RVT-UG6, dnaG (TIGR01391), RMtype1_S_HinAWORF1578P-TRD2-CR2_like (cd17516)
RVT-CRISPR, Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442), Y1_Tnp (pfam01797), HTH_32 (pfam13565), DDE_3 (pfam13358), DDE_Tnp_1_4 (pfam13701), GT4_WcaC-like (cd03825)