myRT

myRT report for GCA_000016585.1_ASM1658v1

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Seq: CP000681.1 Shewanella putrefaciens CN-32, complete genome (4659220 bp)
Overview 1 RT 1: 290767-294394 bp 2 RT 2: 3027173-3035825 bp Neighborhood of RT #1 [290767, 294408] DUF2057 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [3027173, 3036055] Phage_GPA AAA_15 RVT-Retrons PRK09692 INT_Rci_Hp1_C MAF_flag10 Feature: gene Location: 290767-291201 bp Ori: ABP74006.1 Feature: domain Description: DUF2057 Location: 290830-291124 bp Feature: domain Description: DUF2057 Location: 290830-291 1 24 bp Feature: gene Location: 291293-291637 bp Feature: gene Location: 292164-293228 bp Ori: ABP74008.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292182-292839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2921 82-292839 bp Feature: domain Description: GIIM Note: maturase Location: 292923-293139 bp Feature: domain Description: GIIM Note: maturase Location: 292923-2931 39 bp Feature: gene Location: 293225-294058 bp Ori: ABP74009.1 Feature: domain Description: PHA02517 Location: 293243-294035 bp Feature: domain Description: PHA0251 7 Location: 293243-294035 bp Feature: gene Location: 294097-294408 bp Ori: ABP74010.1 Feature: domain Description: InsE Location: 294100-294394 bp Feature: domain Description: InsE Location: 2941 00-294394 bp Feature: gene Location: 3027173-3029095 bp Ori: ABP76330.1 Feature: domain Description: Phage_GPA Location: 3027428-3028322 bp Feature: domain Description: Phage_GPA Location: 3027428-3028322 bp Feature: gene Location: 3029179-3031413 bp Ori: ABP76331.1 Feature: domain Description: AAA_15 Location: 3029182-3030184 bp Feature: domain Description: AAA_1 5 Location: 30291 82-30301 84 bp Feature: gene Location: 3031547-3032698 bp Ori: ABP76332.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3031712-3032309 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3031 71 2-3032309 bp Feature: gene Location: 3033201-3034532 bp Ori: ABP76333.1 Feature: domain Description: PRK09692 Location: 3033246-3033723 bp Feature: domain Description: PRK09692 Location: 3033246-3033723 bp Feature: domain Description: INT_Rci_Hp1_C Location: 3033834-3034371 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 3033834-3034371 bp Feature: gene Location: 3034766-3036055 bp Ori: ABP76334.1 Feature: domain Description: MAF_flag10 Location: 3035312-3035825 bp Feature: domain Description: MAF_flag1 0 Location: 303531 2-3035825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2057 (pfam09829), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), Phage_GPA (pfam05840), AAA_15 (pfam13175), RVT-Retrons, PRK09692 (Integrase; provisional), INT_Rci_Hp1_C (cd00796)
MAF_flag10 (pfam01973)