myRT

myRT report for GCA_000016825.1_ASM1682v1

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Seq: CP000705.1 Lactobacillus reuteri DSM 20016, complete genome (1999618 bp)
Overview 1 RT 1: 111991-115886 bp 2 RT 2: 263712-269838 bp 3 RT 3: 282268-287448 bp 4 RT 4: 549420-554730 bp 5 RT 5: 750074-755019 bp 6 RT 6: 995291-1000417 bp 7 RT 7: 1020682-1026601 bp 8 RT 8: 1151156-1155876 bp 9 RT 9: 1300320-1307599 bp 10 RT 10: 1397706-1407589 bp 11 RT 11: 1482944-1488809 bp Neighborhood of RT #1 [111991, 116050] SsuE COG2461 ApbE RVT-GII GIIM Neighborhood of RT #2 [263712, 269843] PRK02363 pyrG RVT-GII GIIM PRK12830 rpmE2 Neighborhood of RT #3 [282268, 287456] Glutaminase RAYT RVT-GII GIIM LTA_DltD PRK05087 Neighborhood of RT #4 [549420, 554732] RAYT oxalate_frc RVT-GII GIIM AzgA rpsD Neighborhood of RT #5 [750074, 755030] AAK_UMPK-PyrH-Ec frr RVT-GII GIIM RAYT PRK14830 Neighborhood of RT #6 [995291, 1000419] DUF915 Acetyltransf_1 RVT-GII GIIM PRK05313 ACT_1ZPV Neighborhood of RT #7 [1020682, 1026621] Endonuclease_NS PLDc_Bfil_DEXD_like ABC_PhnC_transporter RVT-GII GIIM DUF454 DUF3290 Neighborhood of RT #8 [1151156, 1155947] PRK10703 PBP1_GalR RVT-GII GIIM Ape1-like_AP-endo NTP-PPase_u3 Neighborhood of RT #9 [1300320, 1308465] Tas GT4_GtfA-like RVT-GII GIIM Mub_B2 Mub_B2 PT Gram_pos_anchor YSIRK_signal Neighborhood of RT #10 [1397706, 1407594] glucan_65_rpt COG5263 glucan_65_rpt glucan_65_rpt glucan_65_rpt Glyco_hydro_70 COG5263 Spr RVT-GII GIIM RAYT prfC Neighborhood of RT #11 [1482944, 1488895] RVT-GII GIIM nicotinamidase_related hsdR HsdR Feature: gene Location: 111991-113241 bp Ori: ABQ82366.1 Feature: domain Description: SsuE Location: 111994-112519 bp Feature: domain Description: SsuE Location: 1 1 1 994-1 1 251 9 bp Feature: domain Description: COG2461 Location: 112579-112957 bp Feature: domain Description: COG2461 Location: 1 1 2579-1 1 2957 bp Feature: gene Location: 113244-114170 bp Ori: ABQ82367.1 Feature: domain Description: ApbE Location: 113268-114147 bp Feature: domain Description: ApbE Location: 1 1 3268-1 1 41 47 bp Feature: gene Location: 114668-116050 bp Ori: ABQ82368.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114986-115604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4986-1 1 5604 bp Feature: domain Description: GIIM Note: maturase Location: 115658-115886 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 5658-1 1 5886 bp Feature: gene Location: 263712-264269 bp Ori: ABQ82499.1 Feature: domain Description: PRK02363 Location: 263748-264264 bp Feature: domain Description: PRK02363 Location: 263748-264264 bp Feature: gene Location: 264445-266049 bp Ori: ABQ82500.1 Feature: domain Description: pyrG Location: 264448-266044 bp Feature: domain Description: pyrG Location: 264448-266044 bp Feature: gene Location: 266562-267944 bp Ori: ABQ82501.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266880-267498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266880-267498 bp Feature: domain Description: GIIM Note: maturase Location: 267552-267780 bp Feature: domain Description: GIIM Note: maturase Location: 267552-267780 bp Feature: gene Location: 268228-269505 bp Ori: ABQ82502.1 Feature: domain Description: PRK12830 Location: 268231-269479 bp Feature: domain Description: PRK1 2830 Location: 268231 -269479 bp Feature: gene Location: 269598-269843 bp Ori: ABQ82503.1 Feature: domain Description: rpmE2 Location: 269601-269838 bp Feature: domain Description: rpmE2 Location: 269601 -269838 bp Feature: gene Location: 282268-283209 bp Ori: ABQ82516.1 Feature: domain Description: Glutaminase Location: 282349-283201 bp Feature: domain Description: Glutaminase Location: 282349-283201 bp Feature: gene Location: 283355-283813 bp Ori: ABQ82517.1 Feature: domain Description: RAYT Location: 283373-283754 bp Feature: domain Description: RAYT Location: 283373-283754 bp Feature: gene Location: 284469-285851 bp Ori: ABQ82518.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284787-285402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284787-285402 bp Feature: domain Description: GIIM Note: maturase Location: 285459-285687 bp Feature: domain Description: GIIM Note: maturase Location: 285459-285687 bp Feature: gene Location: 285935-287224 bp Ori: ABQ82519.1 Feature: domain Description: LTA_DltD Location: 285968-287105 bp Feature: domain Description: LTA_DltD Location: 285968-2871 05 bp Feature: gene Location: 287217-287456 bp Ori: ABQ82520.1 Feature: domain Description: PRK05087 Location: 287220-287448 bp Feature: domain Description: PRK05087 Location: 287220-287448 bp Feature: gene Location: 549420-549878 bp Ori: ABQ82764.1 Feature: domain Description: RAYT Location: 549438-549819 bp Feature: domain Description: RAYT Location: 549438-54981 9 bp Feature: gene Location: 550020-550523 bp Ori: ABQ82765.1 Feature: domain Description: oxalate_frc Location: 550026-550473 bp Feature: domain Description: oxalate_frc Location: 550026-550473 bp Feature: gene Location: 551030-552412 bp Ori: ABQ82766.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551348-551966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551 348-551 966 bp Feature: domain Description: GIIM Note: maturase Location: 552020-552248 bp Feature: domain Description: GIIM Note: maturase Location: 552020-552248 bp Feature: gene Location: 552661-553995 bp Ori: ABQ82767.1 Feature: domain Description: AzgA Location: 552688-553972 bp Feature: domain Description: AzgA Location: 552688-553972 bp Feature: gene Location: 554127-554732 bp Ori: ABQ82768.1 Feature: domain Description: rpsD Location: 554130-554730 bp Feature: domain Description: rpsD Location: 5541 30-554730 bp Feature: gene Location: 750074-750796 bp Ori: ABQ82951.1 Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 750095-750788 bp Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 750095-750788 bp Feature: gene Location: 750801-751364 bp Ori: ABQ82952.1 Feature: domain Description: frr Location: 750816-751359 bp Feature: domain Description: frr Location: 75081 6-751 359 bp Feature: gene Location: 751860-753032 bp Ori: ABQ82953.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752178-752796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7521 78-752796 bp Feature: domain Description: GIIM Note: maturase Location: 752850-753027 bp Feature: domain Description: GIIM Note: maturase Location: 752850-753027 bp Feature: gene Location: 753491-753949 bp Ori: ABQ82954.1 Feature: domain Description: RAYT Location: 753509-753890 bp Feature: domain Description: RAYT Location: 753509-753890 bp Feature: gene Location: 754218-755030 bp Ori: ABQ82955.1 Feature: domain Description: PRK14830 Location: 754272-755019 bp Feature: domain Description: PRK1 4830 Location: 754272-75501 9 bp Feature: gene Location: 995291-996136 bp Ori: ABQ83199.1 Feature: domain Description: DUF915 Location: 995390-996134 bp Feature: domain Description: DUF91 5 Location: 995390-9961 34 bp Feature: gene Location: 996296-996820 bp Ori: ABQ83200.1 Feature: domain Description: Acetyltransf_1 Location: 996416-996743 bp Feature: domain Description: Acetyltransf_1 Location: 99641 6-996743 bp Feature: gene Location: 996908-998290 bp Ori: ABQ83201.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 997226-997844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 997226-997844 bp Feature: domain Description: GIIM Note: maturase Location: 997898-998126 bp Feature: domain Description: GIIM Note: maturase Location: 997898-9981 26 bp Feature: gene Location: 998785-1000128 bp Ori: ABQ83202.1 Feature: domain Description: PRK05313 Location: 998788-1000126 bp Feature: domain Description: PRK0531 3 Location: 998788-1 0001 26 bp Feature: gene Location: 1000153-1000419 bp Ori: ABQ83203.1 Feature: domain Description: ACT_1ZPV Location: 1000159-1000417 bp Feature: domain Description: ACT_1 ZPV Location: 1 0001 59-1 00041 7 bp Feature: gene Location: 1020682-1021536 bp Ori: ABQ83223.1 Feature: domain Description: Endonuclease_NS Location: 1020967-1021468 bp Feature: domain Description: Endonuclease_NS Location: 1 020967-1 021 468 bp Feature: gene Location: 1021715-1024039 bp Ori: ABQ83224.1 Feature: domain Description: PLDc_Bfil_DEXD_like Location: 1021784-1022210 bp Feature: domain Description: PLDc_Bfil_DEXD_like Location: 1 021 784-1 02221 0 bp Feature: domain Description: ABC_PhnC_transporter Location: 1023017-1023098 bp Feature: domain Description: ABC_PhnC_transporter Location: 1 02301 7-1 023098 bp Feature: gene Location: 1024123-1025505 bp Ori: ABQ83225.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1024441-1025059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 024441 -1 025059 bp Feature: domain Description: GIIM Note: maturase Location: 1025113-1025341 bp Feature: domain Description: GIIM Note: maturase Location: 1 0251 1 3-1 025341 bp Feature: gene Location: 1025990-1026259 bp Ori: ABQ83226.1 Feature: domain Description: DUF454 Location: 1026017-1026188 bp Feature: domain Description: DUF454 Location: 1 02601 7-1 0261 88 bp Feature: gene Location: 1026376-1026621 bp Ori: ABQ83227.1 Feature: domain Description: DUF3290 Location: 1026382-1026601 bp Feature: domain Description: DUF3290 Location: 1 026382-1 026601 bp Feature: gene Location: 1151156-1152175 bp Ori: ABQ83344.1 Feature: domain Description: PRK10703 Location: 1151159-1151297 bp Feature: domain Description: PRK1 0703 Location: 1 1 51 1 59-1 1 51 297 bp Feature: domain Description: PBP1_GalR Location: 1151348-1152155 bp Feature: domain Description: PBP1 _GalR Location: 1 1 51 348-1 1 521 55 bp Feature: gene Location: 1152344-1152823 bp Feature: gene Location: 1152907-1154289 bp Ori: ABQ83346.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1153225-1153843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 53225-1 1 53843 bp Feature: domain Description: GIIM Note: maturase Location: 1153897-1154125 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 53897-1 1 541 25 bp Feature: gene Location: 1154785-1155612 bp Ori: ABQ83347.1 Feature: domain Description: Ape1-like_AP-endo Location: 1154788-1155604 bp Feature: domain Description: Ape1 -like_AP-endo Location: 1 1 54788-1 1 55604 bp Feature: gene Location: 1155615-1155947 bp Ori: ABQ83348.1 Feature: domain Description: NTP-PPase_u3 Location: 1155630-1155876 bp Feature: domain Description: NTP-PPase_u3 Location: 1 1 55630-1 1 55876 bp Feature: gene Location: 1300320-1301303 bp Ori: ABQ83512.1 Feature: domain Description: Tas Location: 1300335-1301256 bp Feature: domain Description: Tas Location: 1 300335-1 301 256 bp Feature: gene Location: 1301342-1302844 bp Ori: ABQ83513.1 Feature: domain Description: GT4_GtfA-like Location: 1301351-1302812 bp Feature: domain Description: GT4_GtfA-like Location: 1 301 351 -1 30281 2 bp Feature: gene Location: 1302909-1304291 bp Ori: ABQ83514.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1303227-1303845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 303227-1 303845 bp Feature: domain Description: GIIM Note: maturase Location: 1303899-1304127 bp Feature: domain Description: GIIM Note: maturase Location: 1 303899-1 3041 27 bp Feature: gene Location: 1304799-1307036 bp Ori: ABQ83515.1 Feature: domain Description: Mub_B2 Location: 1304949-1305168 bp Feature: domain Description: Mub_B2 Location: 1 304949-1 3051 68 bp Feature: domain Description: Mub_B2 Location: 1305723-1305957 bp Feature: domain Description: Mub_B2 Location: 1 305723-1 305957 bp Feature: domain Description: PT Location: 1306695-1306773 bp Feature: domain Description: PT Location: 1 306695-1 306773 bp Feature: domain Description: Gram_pos_anchor Location: 1306911-1307031 bp Feature: domain Description: Gram_pos_anchor Location: 1 30691 1 -1 307031 bp Feature: gene Location: 1307479-1308465 bp Ori: ABQ83516.1 Feature: domain Description: YSIRK_signal Location: 1307530-1307599 bp Feature: domain Description: YSIRK_signal Location: 1 307530-1 307599 bp Feature: gene Location: 1397706-1401797 bp Ori: ABQ83597.1 Feature: domain Description: glucan_65_rpt Location: 1398021-1398102 bp Feature: domain Description: glucan_65_rpt Location: 1 398021 -1 3981 02 bp Feature: domain Description: COG5263 Location: 1398120-1398474 bp Feature: domain Description: COG5263 Location: 1 3981 20-1 398474 bp Feature: domain Description: glucan_65_rpt Location: 1398522-1398657 bp Feature: domain Description: glucan_65_rpt Location: 1 398522-1 398657 bp Feature: domain Description: glucan_65_rpt Location: 1398798-1398912 bp Feature: domain Description: glucan_65_rpt Location: 1 398798-1 39891 2 bp Feature: domain Description: glucan_65_rpt Location: 1398912-1399044 bp Feature: domain Description: glucan_65_rpt Location: 1 39891 2-1 399044 bp Feature: domain Description: Glyco_hydro_70 Location: 1399359-1401729 bp Feature: domain Description: Glyco_hydro_70 Location: 1 399359-1 401 729 bp Feature: gene Location: 1402329-1403210 bp Ori: ABQ83598.1 Feature: domain Description: COG5263 Location: 1402455-1402854 bp Feature: domain Description: COG5263 Location: 1 402455-1 402854 bp Feature: domain Description: Spr Location: 1402881-1403172 bp Feature: domain Description: Spr Location: 1 402881 -1 4031 72 bp Feature: gene Location: 1403361-1404734 bp Ori: ABQ83599.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1403679-1404297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 403679-1 404297 bp Feature: domain Description: GIIM Note: maturase Location: 1404351-1404579 bp Feature: domain Description: GIIM Note: maturase Location: 1 404351 -1 404579 bp Feature: gene Location: 1405386-1405844 bp Ori: ABQ83600.1 Feature: domain Description: RAYT Location: 1405404-1405785 bp Feature: domain Description: RAYT Location: 1 405404-1 405785 bp Feature: gene Location: 1406017-1407594 bp Ori: ABQ83601.1 Feature: domain Description: prfC Location: 1406032-1407589 bp Feature: domain Description: prfC Location: 1 406032-1 407589 bp Feature: gene Location: 1482944-1484326 bp Ori: ABQ83676.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1483262-1483880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 483262-1 483880 bp Feature: domain Description: GIIM Note: maturase Location: 1483934-1484162 bp Feature: domain Description: GIIM Note: maturase Location: 1 483934-1 4841 62 bp Feature: gene Location: 1484849-1485343 bp Ori: ABQ83677.1 Feature: domain Description: nicotinamidase_related Location: 1484864-1485302 bp Feature: domain Description: nicotinamidase_related Location: 1 484864-1 485302 bp Feature: gene Location: 1485569-1488895 bp Ori: ABQ83678.1 Feature: domain Description: hsdR Location: 1485575-1485929 bp Feature: domain Description: hsdR Location: 1 485575-1 485929 bp Feature: domain Description: HsdR Location: 1486148-1488809 bp Feature: domain Description: HsdR Location: 1 4861 48-1 488809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SsuE (COG0431), COG2461 (Uncharacterized conserved protein, DUF438 domain, may contain hemerythrin domain ), ApbE (pfam02424), RVT-GII, GIIM (pfam08388), PRK02363 (DNA-directed RNA polymerase subunit delta; Reviewed), pyrG (PRK05380), PRK12830 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed), rpmE2 (PRK01678), Glutaminase (pfam04960)
RAYT (COG1943), LTA_DltD (TIGR04092), PRK05087 (D-alanine--poly(phosphoribitol) ligase subunit DltC), oxalate_frc (TIGR03253), AzgA (COG2252), rpsD (PRK05327), AAK_UMPK-PyrH-Ec (cd04254), frr (TIGR00496), PRK14830 (undecaprenyl pyrophosphate synthase; Provisional), DUF915 (pfam06028)
Acetyltransf_1 (pfam00583), PRK05313 (hypothetical protein; Provisional), ACT_1ZPV (cd04872), Endonuclease_NS (smart00892), PLDc_Bfil_DEXD_like (cd09117), ABC_PhnC_transporter (cd03256), DUF454 (pfam04304), DUF3290 (pfam11694), PRK10703 (HTH-type transcriptional repressor PurR), PBP1_GalR (cd01544)
Ape1-like_AP-endo (cd09087), NTP-PPase_u3 (cd11540), Tas (COG0667), GT4_GtfA-like (cd04949), Mub_B2 (pfam17966), PT (pfam04886), Gram_pos_anchor (pfam00746), YSIRK_signal (TIGR01168), glucan_65_rpt (TIGR04035), COG5263 (Glucan-binding domain (YG repeat) )
Glyco_hydro_70 (pfam02324), Spr (COG0791), prfC (TIGR00503), nicotinamidase_related (cd01014), hsdR (TIGR00348), HsdR (COG4096)