myRT

myRT report for GCA_000016985.1_ASM1698v1

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Seq: CP000724.1 Alkaliphilus metalliredigens QYMF, complete genome (4929566 bp)
Overview 1 RT 1: 656410-662654 bp 2 RT 2: 1468643-1476462 bp 3 RT 3: 1671808-1678634 bp 4 RT 4: 2590702-2594390 bp 5 RT 5: 3408473-3414185 bp 6 RT 6: 4395905-4403643 bp Neighborhood of RT #1 [656410, 662654] AgrB RVT-GII GIIM COG5421 Neighborhood of RT #2 [1468643, 1476500] DUF2971 RVT_N RVT-GII PinE Zn_ribbon_recom Recombinase RVT-GII GIIM Acetyltransf_1 Neighborhood of RT #3 [1671808, 1678777] HTH_XRE HATPase_c_3 RVT-GII GIIM PinE Zn_ribbon_recom Recombinase RVT_N Neighborhood of RT #4 [2590702, 2594878] Amidase_2 SPOR XhlA RVT-DGRs Avd_like FGE-sulfatase Neighborhood of RT #5 [3408473, 3414370] Adenyl_transf PDC1_MCP_like RVT-GII GIIM PinE Zn_ribbon_recom Recombinase RVT_N Neighborhood of RT #6 [4395905, 4403643] RnaY RVT-GII GIIM PinE Zn_ribbon_recom Recombinase RVT_N RVT-GII NimA Feature: gene Location: 656410-656991 bp Ori: ABR46846.1 Feature: domain Description: AgrB Location: 656437-656950 bp Feature: domain Description: AgrB Location: 656437-656950 bp Feature: gene Location: 657304-658134 bp Feature: gene Location: 658891-660129 bp Ori: ABR46848.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 659095-659752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 659095-659752 bp Feature: domain Description: GIIM Note: maturase Location: 659830-660031 bp Feature: domain Description: GIIM Note: maturase Location: 659830-660031 bp Feature: gene Location: 660216-661823 bp Ori: ABR46849.1 Feature: domain Description: COG5421 Location: 660735-661668 bp Feature: domain Description: COG5421 Location: 660735-661 668 bp Feature: gene Location: 662490-662654 bp Feature: gene Location: 1468643-1468825 bp Feature: gene Location: 1468844-1469791 bp Ori: ABR47608.1 Feature: domain Description: DUF2971 Location: 1469156-1469486 bp Feature: domain Description: DUF2971 Location: 1 4691 56-1 469486 bp Feature: gene Location: 1470537-1470971 bp Ori: ABR47609.1 Feature: domain Description: RVT_N Location: 1470597-1470831 bp Feature: domain Description: RVT_N Location: 1 470597-1 470831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1470885-1470933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 470885-1 470933 bp Feature: gene Location: 1470980-1473037 bp Ori: ABR47610.1 Feature: domain Description: PinE Location: 1471022-1471652 bp Feature: domain Description: PinE Location: 1 471 022-1 471 652 bp Feature: domain Description: Zn_ribbon_recom Location: 1471973-1472147 bp Feature: domain Description: Zn_ribbon_recom Location: 1 471 973-1 4721 47 bp Feature: domain Description: Recombinase Location: 1472660-1472792 bp Feature: domain Description: Recombinase Location: 1 472660-1 472792 bp Feature: gene Location: 1473616-1474731 bp Ori: ABR47611.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1473619-1474228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 47361 9-1 474228 bp Feature: domain Description: GIIM Note: maturase Location: 1474282-1474513 bp Feature: domain Description: GIIM Note: maturase Location: 1 474282-1 47451 3 bp Feature: gene Location: 1475151-1475789 bp Feature: gene Location: 1476036-1476500 bp Ori: ABR47613.1 Feature: domain Description: Acetyltransf_1 Location: 1476123-1476462 bp Feature: domain Description: Acetyltransf_1 Location: 1 4761 23-1 476462 bp Feature: gene Location: 1671808-1672053 bp Ori: ABR47776.1 Feature: domain Description: HTH_XRE Location: 1671841-1672027 bp Feature: domain Description: HTH_XRE Location: 1 671 841 -1 672027 bp Feature: gene Location: 1672174-1673805 bp Ori: ABR47777.1 Feature: domain Description: HATPase_c_3 Location: 1672255-1672591 bp Feature: domain Description: HATPase_c_3 Location: 1 672255-1 672591 bp Feature: gene Location: 1674607-1675683 bp Ori: ABR47778.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1674610-1675219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67461 0-1 67521 9 bp Feature: domain Description: GIIM Note: maturase Location: 1675273-1675510 bp Feature: domain Description: GIIM Note: maturase Location: 1 675273-1 67551 0 bp Feature: gene Location: 1676262-1678319 bp Ori: ABR47779.1 Feature: domain Description: PinE Location: 1676304-1676943 bp Feature: domain Description: PinE Location: 1 676304-1 676943 bp Feature: domain Description: Zn_ribbon_recom Location: 1677255-1677429 bp Feature: domain Description: Zn_ribbon_recom Location: 1 677255-1 677429 bp Feature: domain Description: Recombinase Location: 1677942-1678074 bp Feature: domain Description: Recombinase Location: 1 677942-1 678074 bp Feature: gene Location: 1678328-1678777 bp Ori: ABR47780.1 Feature: domain Description: RVT_N Location: 1678400-1678634 bp Feature: domain Description: RVT_N Location: 1 678400-1 678634 bp Feature: gene Location: 2590702-2591670 bp Ori: ABR48701.1 Feature: domain Description: Amidase_2 Location: 2590768-2591152 bp Feature: domain Description: Amidase_2 Location: 2590768-2591 1 52 bp Feature: domain Description: SPOR Location: 2591242-2591443 bp Feature: domain Description: SPOR Location: 2591 242-2591 443 bp Feature: gene Location: 2591685-2591930 bp Ori: ABR48702.1 Feature: domain Description: XhlA Location: 2591724-2591919 bp Feature: domain Description: XhlA Location: 2591 724-2591 91 9 bp Feature: gene Location: 2592000-2593082 bp Ori: ABR48703.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2592207-2592873 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2592207-2592873 bp Feature: gene Location: 2593405-2593746 bp Ori: ABR48704.1 Feature: domain Description: Avd_like Location: 2593426-2593738 bp Feature: domain Description: Avd_like Location: 2593426-2593738 bp Feature: gene Location: 2593820-2594878 bp Ori: ABR48705.1 Feature: domain Description: FGE-sulfatase Location: 2594048-2594390 bp Feature: domain Description: FGE-sulfatase Location: 2594048-2594390 bp Feature: gene Location: 3408473-3409363 bp Ori: ABR49485.1 Feature: domain Description: Adenyl_transf Location: 3408476-3409307 bp Feature: domain Description: Adenyl_transf Location: 3408476-3409307 bp Feature: gene Location: 3409666-3410181 bp Ori: ABR49486.1 Feature: domain Description: PDC1_MCP_like Location: 3409858-3410164 bp Feature: domain Description: PDC1 _MCP_like Location: 3409858-341 01 64 bp Feature: gene Location: 3410348-3411352 bp Ori: ABR49487.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3410354-3410981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 0354-341 0981 bp Feature: domain Description: GIIM Note: maturase Location: 3411062-3411281 bp Feature: domain Description: GIIM Note: maturase Location: 341 1 062-341 1 281 bp Feature: gene Location: 3411912-3413969 bp Ori: ABR49488.1 Feature: domain Description: PinE Location: 3411954-3412584 bp Feature: domain Description: PinE Location: 341 1 954-341 2584 bp Feature: domain Description: Zn_ribbon_recom Location: 3412905-3413079 bp Feature: domain Description: Zn_ribbon_recom Location: 341 2905-341 3079 bp Feature: domain Description: Recombinase Location: 3413610-3413727 bp Feature: domain Description: Recombinase Location: 341 361 0-341 3727 bp Feature: gene Location: 3413927-3414370 bp Ori: ABR49489.1 Feature: domain Description: RVT_N Location: 3413942-3414185 bp Feature: domain Description: RVT_N Location: 341 3942-341 41 85 bp Feature: gene Location: 4395905-4396636 bp Ori: ABR50364.1 Feature: domain Description: RnaY Location: 4395959-4396628 bp Feature: domain Description: RnaY Location: 4395959-4396628 bp Feature: gene Location: 4396857-4397291 bp Feature: gene Location: 4397526-4398599 bp Ori: ABR50366.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4397532-4398156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4397532-43981 56 bp Feature: domain Description: GIIM Note: maturase Location: 4398207-4398441 bp Feature: domain Description: GIIM Note: maturase Location: 4398207-4398441 bp Feature: gene Location: 4399160-4401217 bp Ori: ABR50367.1 Feature: domain Description: PinE Location: 4399202-4399832 bp Feature: domain Description: PinE Location: 4399202-4399832 bp Feature: domain Description: Zn_ribbon_recom Location: 4400153-4400327 bp Feature: domain Description: Zn_ribbon_recom Location: 44001 53-4400327 bp Feature: domain Description: Recombinase Location: 4400840-4400972 bp Feature: domain Description: Recombinase Location: 4400840-4400972 bp Feature: gene Location: 4401226-4401660 bp Ori: ABR50368.1 Feature: domain Description: RVT_N Location: 4401286-4401520 bp Feature: domain Description: RVT_N Location: 4401 286-4401 520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4401574-4401622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4401 574-4401 622 bp Feature: gene Location: 4402496-4402960 bp Ori: ABR50369.1 Feature: domain Description: NimA Location: 4402514-4402952 bp Feature: domain Description: NimA Location: 440251 4-4402952 bp Feature: gene Location: 4403398-4403643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AgrB (smart00793), RVT-GII, GIIM (pfam08388), COG5421 (Transposase ), DUF2971 (pfam11185), RVT_N (pfam13655), PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508), Acetyltransf_1 (pfam00583)
HTH_XRE (smart00530), HATPase_c_3 (pfam13589), Amidase_2 (pfam01510), SPOR (pfam05036), XhlA (pfam10779), RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781), Adenyl_transf (pfam04439), PDC1_MCP_like (cd12913)
RnaY (COG1418), NimA (COG3467)