myRT

myRT report for GCA_000017145.1_ASM1714v1

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Seq: CP000738.1 Sinorhizobium medicae WSM419, complete genome (3781904 bp)
Overview 1 RT 1: 1304343-1308666 bp Neighborhood of RT #1 [1304343, 1308767] TnpB_IS66 COG3436 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C ygfB_yecA Feature: gene Location: 1304343-1304699 bp Ori: ABR60071.1 Feature: domain Description: TnpB_IS66 Location: 1304373-1304664 bp Feature: domain Description: TnpB_IS66 Location: 1 304373-1 304664 bp Feature: gene Location: 1304748-1305509 bp Ori: ABR60072.1 Feature: domain Description: COG3436 Location: 1304997-1305474 bp Feature: domain Description: COG3436 Location: 1 304997-1 305474 bp Feature: gene Location: 1306022-1307281 bp Ori: ABR60073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1306238-1306892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 306238-1 306892 bp Feature: domain Description: GIIM Note: maturase Location: 1306973-1307189 bp Feature: domain Description: GIIM Note: maturase Location: 1 306973-1 3071 89 bp Feature: gene Location: 1307335-1308207 bp Ori: ABR60074.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1307368-1308016 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 307368-1 30801 6 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1308037-1308154 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 308037-1 3081 54 bp Feature: gene Location: 1308204-1308767 bp Ori: ABR60075.1 Feature: domain Description: ygfB_yecA Location: 1308261-1308666 bp Feature: domain Description: ygfB_yecA Location: 1 308261 -1 308666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), COG3436 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), ygfB_yecA (TIGR02292)

Seq: CP000741.1 Sinorhizobium medicae WSM419 plasmid pSMED03, complete genome (219313 bp)
Overview 1 RT 1: 10537-14612 bp Neighborhood of RT #1 [10537, 14617] CheB-CheR_fusion CheR_N RVT-GII Transposase_mut Fet4 Feature: gene Location: 10537-11547 bp Ori: ABR64935.1 Feature: domain Description: CheB-CheR_fusion Location: 10678-11218 bp Feature: domain Description: CheB-CheR_fusion Location: 10678-112 18 bp Feature: domain Description: CheR_N Location: 11311-11452 bp Feature: domain Description: CheR_N Location: 11311-11452 bp Feature: gene Location: 11534-11827 bp Feature: gene Location: 12118-12594 bp Ori: ABR64937.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12421-12547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 42 1-12 547 bp Feature: gene Location: 13165-13722 bp Ori: ABR64938.1 Feature: domain Description: Transposase_mut Location: 13198-13687 bp Feature: domain Description: Transposase_mut Location: 13198-13687 bp Feature: gene Location: 14195-14617 bp Ori: ABR64939.1 Feature: domain Description: Fet4 Location: 14204-14612 bp Feature: domain Description: Fet4 Location: 142 04-14612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheB-CheR_fusion (cd16434), CheR_N (pfam03705), RVT-GII, Transposase_mut (pfam00872), Fet4 (COG5478)

Seq: CP000740.1 Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence (1245408 bp)
Overview 1 RT 1: 477820-482209 bp 2 RT 2: 1028826-1032810 bp Neighborhood of RT #1 [477820, 482244] ygfB_yecA DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 TnpB_IS66 Neighborhood of RT #2 [1028826, 1032845] ygfB_yecA DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 Feature: gene Location: 477820-478383 bp Ori: ABR64264.1 Feature: domain Description: ygfB_yecA Location: 477877-478282 bp Feature: domain Description: ygfB_yecA Location: 477877-478282 bp Feature: gene Location: 478380-479252 bp Ori: ABR64265.1 Feature: domain Description: DDE_Tnp_IS66 Location: 478413-479061 bp Feature: domain Description: DDE_Tnp_IS66 Location: 478413 -479061 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 479082-479199 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 479082-479199 bp Feature: gene Location: 479306-480565 bp Ori: ABR64266.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479522-480176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479522-480176 bp Feature: domain Description: GIIM Note: maturase Location: 480257-480473 bp Feature: domain Description: GIIM Note: maturase Location: 480257-480473 bp Feature: gene Location: 481078-481839 bp Ori: ABR64267.1 Feature: domain Description: COG3436 Location: 481327-481804 bp Feature: domain Description: COG3 43 6 Location: 4813 27-481804 bp Feature: gene Location: 481888-482244 bp Ori: ABR64268.1 Feature: domain Description: TnpB_IS66 Location: 481918-482209 bp Feature: domain Description: TnpB_IS66 Location: 481918-482209 bp Feature: gene Location: 1028826-1029389 bp Ori: ABR64733.1 Feature: domain Description: ygfB_yecA Location: 1028883-1029288 bp Feature: domain Description: ygfB_yecA Location: 1028883 -1029288 bp Feature: gene Location: 1029386-1030258 bp Ori: ABR64734.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1029419-1030067 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1029419-103 0067 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1030088-1030205 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 103 0088-103 0205 bp Feature: gene Location: 1030312-1031571 bp Ori: ABR64735.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030528-1031182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 0528-103 1182 bp Feature: domain Description: GIIM Note: maturase Location: 1031263-1031479 bp Feature: domain Description: GIIM Note: maturase Location: 103 1263 -103 1479 bp Feature: gene Location: 1031704-1032024 bp Feature: gene Location: 1032084-1032845 bp Ori: ABR64737.1 Feature: domain Description: COG3436 Location: 1032333-1032810 bp Feature: domain Description: COG3 43 6 Location: 103 23 3 3 -103 2810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ygfB_yecA (TIGR02292), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717)

Seq: CP000739.1 Sinorhizobium medicae WSM419 plasmid pSMED01, complete genome (1570951 bp)
Overview 1 RT 1: 1411022-1414793 bp Neighborhood of RT #1 [1411022, 1414793] COG3932 RVT-GII GIIM Feature: gene Location: 1411022-1411648 bp Ori: ABR63684.1 Feature: domain Description: COG3932 Location: 1411076-1411643 bp Feature: domain Description: COG3932 Location: 14 11076-14 1164 3 bp Feature: gene Location: 1411813-1412025 bp Feature: gene Location: 1412815-1414074 bp Ori: ABR63686.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1413031-1413685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 13031-14 13685 bp Feature: domain Description: GIIM Note: maturase Location: 1413766-1413982 bp Feature: domain Description: GIIM Note: maturase Location: 14 13766-14 13982 bp Feature: gene Location: 1414207-1414527 bp Feature: gene Location: 1414605-1414793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3932 (Uncharacterized conserved protein ), RVT-GII, GIIM (pfam08388)