myRT

myRT report for GCA_000017745.1_ASM1774v1

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Seq: CP000795.1 Escherichia coli E24377A plasmid pETEC_80, complete sequence (79237 bp)
Overview 1 RT 1: 12193-16333 bp Neighborhood of RT #1 [12193, 16333] DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM Feature: gene Location: 12193-12384 bp Ori: ABV16220.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 12253-12361 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 2253-1 2361 bp Feature: gene Location: 13358-13804 bp Ori: ABV16215.1 Feature: domain Description: PHA02517 Location: 13361-13802 bp Feature: domain Description: PHA0251 7 Location: 1 3361 -1 3802 bp Feature: gene Location: 13921-15429 bp Ori: ABV16230.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14179-14911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 79-1 491 1 bp Feature: domain Description: GIIM Note: maturase Location: 14986-15184 bp Feature: domain Description: GIIM Note: maturase Location: 1 4986-1 51 84 bp Feature: gene Location: 16036-16146 bp Feature: gene Location: 16130-16333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CP000800.1 Escherichia coli E24377A, complete genome (4979619 bp)
Overview 1 RT 1: 3026474-3035524 bp 2 RT 2: 3338000-3346355 bp 3 RT 3: 4830639-4837230 bp 4 RT 4: 4846876-4853335 bp Neighborhood of RT #1 [3026474, 3035535] InsE Tra5 RVT-UG8 INT_Rci_Hp1_C INT_P4_C mutS1 Neighborhood of RT #2 [3338000, 3346396] ResIII COG3587 RVT-GII GIIM InsE McrC Neighborhood of RT #3 [4830639, 4837232] CAD1 Arm-DNA-bind_3 RVT-GII GIIM InsE PRK09183 Neighborhood of RT #4 [4846876, 4853340] CE4_Ecf1_like_5s CE4_Ecf1_like_5s InsE RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C COG3436 Feature: gene Location: 3026474-3026773 bp Ori: ABV18234.1 Feature: domain Description: InsE Location: 3026501-3026768 bp Feature: domain Description: InsE Location: 302 6501-302 6768 bp Feature: gene Location: 3026770-3027636 bp Ori: ABV17594.1 Feature: domain Description: Tra5 Location: 3026881-3027631 bp Feature: domain Description: Tra5 Location: 302 6881-302 7631 bp Feature: gene Location: 3028075-3030093 bp Ori: ABV17919.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3028645-3029095 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 302 8645-302 9095 bp Feature: gene Location: 3031348-3032808 bp Ori: ABV16803.1 Feature: domain Description: INT_Rci_Hp1_C Location: 3031723-3031930 bp Feature: domain Description: INT_Rci_Hp1_C Location: 303172 3-3031930 bp Feature: domain Description: INT_P4_C Location: 3032149-3032686 bp Feature: domain Description: INT_P4_C Location: 3032 149-3032 686 bp Feature: gene Location: 3032953-3035535 bp Ori: ABV18168.1 Gene: mutS Feature: domain Description: mutS1 Location: 3033004-3035524 bp Feature: domain Description: mutS1 Location: 3033004-303552 4 bp Feature: gene Location: 3338000-3340792 bp Ori: ABV18677.1 Feature: domain Description: ResIII Location: 3338120-3338684 bp Feature: domain Description: ResIII Location: 333812 0-3338684 bp Feature: domain Description: COG3587 Location: 3339110-3339311 bp Feature: domain Description: COG3587 Location: 3339110-3339311 bp Feature: gene Location: 3340022-3340447 bp Feature: gene Location: 3341749-3343257 bp Ori: ABV19668.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3342007-3342739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3342 007-3342 739 bp Feature: domain Description: GIIM Note: maturase Location: 3342814-3343012 bp Feature: domain Description: GIIM Note: maturase Location: 3342 814-3343012 bp Feature: gene Location: 3344319-3344621 bp Ori: ABV20726.1 Feature: domain Description: InsE Location: 3344328-3344610 bp Feature: domain Description: InsE Location: 334432 8-3344610 bp Feature: gene Location: 3345110-3346396 bp Ori: ABV17544.1 Feature: domain Description: McrC Location: 3345179-3346355 bp Feature: domain Description: McrC Location: 3345179-3346355 bp Feature: gene Location: 4830639-4831658 bp Ori: ABV20366.1 Feature: domain Description: CAD1 Location: 4830657-4831647 bp Feature: domain Description: CAD1 Location: 4830657-4831647 bp Feature: gene Location: 4832137-4832439 bp Ori: ABV18850.1 Feature: domain Description: Arm-DNA-bind_3 Location: 4832146-4832398 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4832 146-4832 398 bp Feature: gene Location: 4833844-4835352 bp Ori: ABV18980.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4834102-4834834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4834102 -4834834 bp Feature: domain Description: GIIM Note: maturase Location: 4834909-4835107 bp Feature: domain Description: GIIM Note: maturase Location: 4834909-4835107 bp Feature: gene Location: 4836438-4836764 bp Ori: ABV16811.1 Feature: domain Description: InsE Location: 4836441-4836762 bp Feature: domain Description: InsE Location: 4836441-4836762 bp Feature: gene Location: 4836939-4837232 bp Ori: ABV16738.1 Feature: domain Description: PRK09183 Location: 4836942-4837230 bp Feature: domain Description: PRK09183 Location: 4836942 -48372 30 bp Feature: gene Location: 4846876-4847697 bp Ori: ABV20269.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 4846954-4847350 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 4846954-4847350 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 4847356-4847635 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 4847356-4847635 bp Feature: gene Location: 4847904-4848206 bp Ori: ABV17412.1 Feature: domain Description: InsE Location: 4847943-4848192 bp Feature: domain Description: InsE Location: 4847943-4848192 bp Feature: gene Location: 4849294-4850802 bp Ori: ABV20780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4849552-4850284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4849552 -48502 84 bp Feature: domain Description: GIIM Note: maturase Location: 4850359-4850557 bp Feature: domain Description: GIIM Note: maturase Location: 4850359-4850557 bp Feature: gene Location: 4851405-4852943 bp Ori: ABV18928.1 Feature: domain Description: LZ_Tnp_IS66 Location: 4851522-4851735 bp Feature: domain Description: LZ_Tnp_IS66 Location: 485152 2 -4851735 bp Feature: domain Description: zf-IS66 Location: 4851762-4851888 bp Feature: domain Description: zf-IS66 Location: 4851762 -4851888 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4851933-4852788 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4851933-4852 788 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4852809-4852920 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4852 809-4852 92 0 bp Feature: gene Location: 4852993-4853340 bp Ori: ABV16861.1 Feature: domain Description: COG3436 Location: 4852996-4853335 bp Feature: domain Description: COG3436 Location: 4852 996-4853335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), Tra5 (COG2801), RVT-UG8, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070), ResIII (pfam04851), COG3587 (Restriction endonuclease ), RVT-GII, GIIM (pfam08388)
McrC (COG4268), CAD1 (cd05283), Arm-DNA-bind_3 (pfam13356), PRK09183 (transposase/IS protein; Provisional), CE4_Ecf1_like_5s (cd10969), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3436 (Transposase )

Seq: CP000797.1 Escherichia coli E24377A plasmid pETEC_73, complete sequence (70609 bp)
Overview 1 RT 1: 24963-30066 bp 2 RT 2: 49811-57421 bp Neighborhood of RT #1 [24963, 30068] PRK15186 RVT-GII GIIM PRK09413 PRK09409 Neighborhood of RT #2 [49811, 58452] PilM InsE RVT-GII GIIM TraG-D_C Relaxase Relaxase Relaxase Feature: gene Location: 24963-25055 bp Feature: gene Location: 25398-26027 bp Ori: ABV16340.1 Feature: domain Description: PRK15186 Location: 25713-26016 bp Feature: domain Description: PRK15186 Location: 25713 -26016 bp Feature: gene Location: 27290-28060 bp Ori: ABV16318.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27299-27668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27299-27668 bp Feature: domain Description: GIIM Note: maturase Location: 27746-27971 bp Feature: domain Description: GIIM Note: maturase Location: 27746-27971 bp Feature: gene Location: 28840-29205 bp Ori: ABV16347.1 Feature: domain Description: PRK09413 Location: 28843-29203 bp Feature: domain Description: PRK09413 Location: 28843 -29203 bp Feature: gene Location: 29163-30068 bp Ori: ABV16333.1 Feature: domain Description: PRK09409 Location: 29166-30066 bp Feature: domain Description: PRK09409 Location: 29166-3 0066 bp Feature: gene Location: 49811-50248 bp Ori: ABV16370.1 Feature: domain Description: PilM Location: 49850-50243 bp Feature: domain Description: PilM Location: 49850-50243 bp Feature: gene Location: 50477-50803 bp Ori: ABV16360.1 Feature: domain Description: InsE Location: 50480-50801 bp Feature: domain Description: InsE Location: 50480-50801 bp Feature: gene Location: 51889-53397 bp Ori: ABV16343.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52147-52879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52147-52879 bp Feature: domain Description: GIIM Note: maturase Location: 52954-53152 bp Feature: domain Description: GIIM Note: maturase Location: 52954-53 152 bp Feature: gene Location: 53944-55716 bp Ori: ABV16322.1 Feature: domain Description: TraG-D_C Location: 54739-55009 bp Feature: domain Description: TraG-D_C Location: 5473 9-55009 bp Feature: gene Location: 55753-58452 bp Ori: ABV16373.1 Feature: domain Description: Relaxase Location: 55939-56695 bp Feature: domain Description: Relaxase Location: 5593 9-56695 bp Feature: domain Description: Relaxase Location: 56827-56998 bp Feature: domain Description: Relaxase Location: 56827-56998 bp Feature: domain Description: Relaxase Location: 57184-57421 bp Feature: domain Description: Relaxase Location: 57184-57421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15186 (AraC family transcriptional regulator; Provisional), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed), PRK09409 (IS2 transposase TnpB; Reviewed), PilM (pfam07419), InsE (COG2963), TraG-D_C (pfam12696), Relaxase (pfam03432)

Seq: CP000799.1 Escherichia coli E24377A plasmid pETEC_74, complete sequence (74224 bp)
Overview 1 RT 1: 10398-17452 bp 2 RT 2: 20998-28057 bp Neighborhood of RT #1 [10398, 17784] PRK13704 InsE RVT-GII GIIM PRK09183 COG4584 Neighborhood of RT #2 [20998, 28182] PRK13705 RVT-GII GIIM InsE PRK13699 DUF1380 Feature: gene Location: 10398-11117 bp Ori: ABV16430.1 Feature: domain Description: PRK13704 Location: 10401-11112 bp Feature: domain Description: PRK13704 Location: 104 01-11112 bp Feature: gene Location: 11971-12297 bp Ori: ABV16419.1 Feature: domain Description: InsE Location: 11974-12295 bp Feature: domain Description: InsE Location: 11974 -12295 bp Feature: gene Location: 13368-14891 bp Ori: ABV16441.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13641-14373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1364 1-14 373 bp Feature: domain Description: GIIM Note: maturase Location: 14448-14646 bp Feature: domain Description: GIIM Note: maturase Location: 14 4 4 8-14 64 6 bp Feature: gene Location: 15818-16612 bp Ori: ABV16443.1 Feature: domain Description: PRK09183 Location: 15827-16565 bp Feature: domain Description: PRK09183 Location: 15827-16565 bp Feature: gene Location: 16612-17784 bp Ori: ABV16397.1 Feature: domain Description: COG4584 Location: 16615-17452 bp Feature: domain Description: COG4 584 Location: 16615-174 52 bp Feature: gene Location: 20998-22164 bp Ori: ABV16410.1 Gene: sopA Feature: domain Description: PRK13705 Location: 21001-22162 bp Feature: domain Description: PRK13705 Location: 21001-22162 bp Feature: gene Location: 22120-22272 bp Feature: gene Location: 23260-24783 bp Ori: ABV16383.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23533-24265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23533-24 265 bp Feature: domain Description: GIIM Note: maturase Location: 24340-24538 bp Feature: domain Description: GIIM Note: maturase Location: 24 34 0-24 538 bp Feature: gene Location: 25854-26180 bp Ori: ABV16437.1 Feature: domain Description: InsE Location: 25857-26178 bp Feature: domain Description: InsE Location: 25857-26178 bp Feature: gene Location: 27397-28182 bp Ori: ABV16425.1 Feature: domain Description: PRK13699 Location: 27400-27745 bp Feature: domain Description: PRK13699 Location: 274 00-2774 5 bp Feature: domain Description: DUF1380 Location: 27763-28057 bp Feature: domain Description: DUF1380 Location: 27763-28057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13704 (plasmid SOS inhibition protein A; Provisional), InsE (COG2963), RVT-GII, GIIM (pfam08388), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), PRK13705 (plasmid-partitioning protein SopA; Provisional), PRK13699 (putative methylase; Provisional), DUF1380 (pfam07128)