myRT

myRT report for GCA_000017845.1_ASM1784v1

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Seq: CP000806.1 Cyanothece sp. ATCC 51142 circular chromosome, complete sequence (4934271 bp)
Overview 1 RT 1: 414049-419812 bp 2 RT 2: 642580-647418 bp 3 RT 3: 1082431-1087724 bp 4 RT 4: 1600611-1606492 bp 5 RT 5: 2884669-2888420 bp 6 RT 6: 3221717-3226632 bp 7 RT 7: 4824173-4830676 bp 8 RT 8: 4930564-4933824 bp Neighborhood of RT #1 [414049, 419955] McrA RVT_N RVT-GII GIIM HNH PRK10502 Beta4Glucosyltransferase Neighborhood of RT #2 [642580, 647618] psbA RVT_N RVT-GII GIIM McrA DDE_Tnp_4 HTH_Tnp_4 Neighborhood of RT #3 [1082431, 1087732] PRK00885 PRK04447 RVT-Retrons COG1569 Neighborhood of RT #4 [1600611, 1606497] PutA D1pyr5carbox2 HicB_lk_antitox RVT-UG16 MoaB PRK13612 Neighborhood of RT #5 [2884669, 2888420] recR HTH_XRE RVT_N RVT-GII GIIM HNH Neighborhood of RT #6 [3221717, 3226637] EF-G_bact RVT_N RVT-GII GIIM HNHc PRK12740 COG2929 Neighborhood of RT #7 [4824173, 4830684] Uma2 FrhB RVT_N RVT-GII GIIM McrA YpfJ LON Neighborhood of RT #8 [4930564, 4934099] TIGR00106 RVT_N RVT-GII GIIM HNHc Abhydrolase_1 Feature: gene Location: 414049-414546 bp Ori: ACB49759.1 Feature: domain Description: McrA Location: 414082-414496 bp Feature: domain Description: McrA Location: 41 4082-41 4496 bp Feature: gene Location: 414543-414752 bp Feature: gene Location: 416243-418183 bp Ori: ACB49761.1 Feature: domain Description: RVT_N Location: 416396-416642 bp Feature: domain Description: RVT_N Location: 41 6396-41 6642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416684-417383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 6684-41 7383 bp Feature: domain Description: GIIM Note: maturase Location: 417485-417716 bp Feature: domain Description: GIIM Note: maturase Location: 41 7485-41 771 6 bp Feature: domain Description: HNH Note: nucleases Location: 417935-418070 bp Feature: domain Description: HNH Note: nucleases Location: 41 7935-41 8070 bp Feature: gene Location: 418398-419000 bp Ori: ACB49762.1 Feature: domain Description: PRK10502 Location: 418446-418986 bp Feature: domain Description: PRK1 0502 Location: 41 8446-41 8986 bp Feature: gene Location: 419005-419955 bp Ori: ACB49763.1 Feature: domain Description: Beta4Glucosyltransferase Location: 419032-419812 bp Feature: domain Description: Beta4Glucosyltransferase Location: 41 9032-41 981 2 bp Feature: gene Location: 642580-643650 bp Ori: ACB49987.1 Gene: psbA5 Feature: domain Description: psbA Location: 642583-643645 bp Feature: domain Description: psbA Location: 642583-643645 bp Feature: gene Location: 643860-644042 bp Feature: gene Location: 644157-645980 bp Ori: ACB49989.1 Feature: domain Description: RVT_N Location: 644187-644433 bp Feature: domain Description: RVT_N Location: 6441 87-644433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 644475-645171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 644475-6451 71 bp Feature: domain Description: GIIM Note: maturase Location: 645276-645501 bp Feature: domain Description: GIIM Note: maturase Location: 645276-645501 bp Feature: domain Description: McrA Location: 645588-645858 bp Feature: domain Description: McrA Location: 645588-645858 bp Feature: gene Location: 646574-647041 bp Ori: ACB49990.1 Feature: domain Description: DDE_Tnp_4 Location: 646592-646916 bp Feature: domain Description: DDE_Tnp_4 Location: 646592-64691 6 bp Feature: gene Location: 647079-647618 bp Ori: ACB49991.1 Feature: domain Description: HTH_Tnp_4 Location: 647271-647418 bp Feature: domain Description: HTH_Tnp_4 Location: 647271 -64741 8 bp Feature: gene Location: 1082431-1083690 bp Ori: ACB50434.1 Gene: purD Feature: domain Description: PRK00885 Location: 1082437-1083682 bp Feature: domain Description: PRK00885 Location: 1 082437-1 083682 bp Feature: gene Location: 1083807-1084916 bp Ori: ACB50435.1 Feature: domain Description: PRK04447 Location: 1083828-1084902 bp Feature: domain Description: PRK04447 Location: 1 083828-1 084902 bp Feature: gene Location: 1084986-1086824 bp Ori: ACB50436.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1085211-1085811 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 08521 1 -1 08581 1 bp Feature: gene Location: 1087081-1087329 bp Feature: gene Location: 1087316-1087732 bp Ori: ACB50438.1 Feature: domain Description: COG1569 Location: 1087334-1087724 bp Feature: domain Description: COG1 569 Location: 1 087334-1 087724 bp Feature: gene Location: 1600611-1603583 bp Ori: ACB50945.1 Gene: putA Feature: domain Description: PutA Location: 1600635-1601820 bp Feature: domain Description: PutA Location: 1 600635-1 601 820 bp Feature: domain Description: D1pyr5carbox2 Location: 1602027-1603545 bp Feature: domain Description: D1 pyr5carbox2 Location: 1 602027-1 603545 bp Feature: gene Location: 1603599-1603928 bp Ori: ACB50946.1 Feature: domain Description: HicB_lk_antitox Location: 1603641-1603893 bp Feature: domain Description: HicB_lk_antitox Location: 1 603641 -1 603893 bp Feature: gene Location: 1604027-1605517 bp Ori: ACB50947.1 Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 1604405-1604819 bp Feature: RT Description: RVT-UG1 6 Note: UG1 6 RT Location: 1 604405-1 60481 9 bp Feature: gene Location: 1605537-1606037 bp Ori: ACB50948.1 Gene: moaB2 Feature: domain Description: MoaB Location: 1605567-1606029 bp Feature: domain Description: MoaB Location: 1 605567-1 606029 bp Feature: gene Location: 1606162-1606497 bp Ori: ACB50949.1 Gene: psb28 Feature: domain Description: PRK13612 Location: 1606165-1606492 bp Feature: domain Description: PRK1 361 2 Location: 1 6061 65-1 606492 bp Feature: gene Location: 2884669-2885277 bp Ori: ACB52174.1 Gene: recR Feature: domain Description: recR Location: 2884690-2885266 bp Feature: domain Description: recR Location: 2884690-2885266 bp Feature: gene Location: 2885465-2885632 bp Ori: ACB52175.1 Feature: domain Description: HTH_XRE Location: 2885474-2885567 bp Feature: domain Description: HTH_XRE Location: 2885474-2885567 bp Feature: gene Location: 2885714-2887579 bp Ori: ACB52176.1 Feature: domain Description: RVT_N Location: 2885864-2886110 bp Feature: domain Description: RVT_N Location: 2885864-28861 1 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2886152-2886848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28861 52-2886848 bp Feature: domain Description: GIIM Note: maturase Location: 2886947-2887184 bp Feature: domain Description: GIIM Note: maturase Location: 2886947-28871 84 bp Feature: domain Description: HNH Note: nucleases Location: 2887400-2887535 bp Feature: domain Description: HNH Note: nucleases Location: 2887400-2887535 bp Feature: gene Location: 2887753-2887968 bp Feature: gene Location: 2888196-2888420 bp Feature: gene Location: 3221717-3222415 bp Ori: ACB52452.1 Feature: domain Description: EF-G_bact Location: 3221750-3222404 bp Feature: domain Description: EF-G_bact Location: 3221 750-3222404 bp Feature: gene Location: 3222532-3222747 bp Feature: gene Location: 3222921-3224786 bp Ori: ACB52454.1 Feature: domain Description: RVT_N Location: 3223071-3223317 bp Feature: domain Description: RVT_N Location: 3223071 -322331 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3223359-3224055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3223359-3224055 bp Feature: domain Description: GIIM Note: maturase Location: 3224154-3224391 bp Feature: domain Description: GIIM Note: maturase Location: 32241 54-3224391 bp Feature: domain Description: HNHc Note: nucleases Location: 3224577-3224736 bp Feature: domain Description: HNHc Note: nucleases Location: 3224577-3224736 bp Feature: gene Location: 3225150-3226220 bp Ori: ACB52455.1 Feature: domain Description: PRK12740 Location: 3225168-3226194 bp Feature: domain Description: PRK1 2740 Location: 32251 68-32261 94 bp Feature: gene Location: 3226350-3226637 bp Ori: ACB52456.1 Feature: domain Description: COG2929 Location: 3226365-3226632 bp Feature: domain Description: COG2929 Location: 3226365-3226632 bp Feature: gene Location: 4824173-4824736 bp Ori: ACB54009.1 Feature: domain Description: Uma2 Location: 4824182-4824731 bp Feature: domain Description: Uma2 Location: 48241 82-4824731 bp Feature: gene Location: 4825163-4826359 bp Ori: ACB54010.1 Feature: domain Description: FrhB Location: 4825217-4826264 bp Feature: domain Description: FrhB Location: 482521 7-4826264 bp Feature: gene Location: 4826547-4828346 bp Ori: ACB54011.1 Feature: domain Description: RVT_N Location: 4826613-4826859 bp Feature: domain Description: RVT_N Location: 482661 3-4826859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4826904-4827591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4826904-4827591 bp Feature: domain Description: GIIM Note: maturase Location: 4827693-4827921 bp Feature: domain Description: GIIM Note: maturase Location: 4827693-4827921 bp Feature: domain Description: McrA Location: 4827999-4828311 bp Feature: domain Description: McrA Location: 4827999-482831 1 bp Feature: gene Location: 4828902-4829483 bp Ori: ACB54012.1 Feature: domain Description: YpfJ Location: 4829034-4829448 bp Feature: domain Description: YpfJ Location: 4829034-4829448 bp Feature: gene Location: 4830046-4830684 bp Ori: ACB54013.1 Feature: domain Description: LON Location: 4830055-4830676 bp Feature: domain Description: LON Location: 4830055-4830676 bp Feature: gene Location: 4930564-4930872 bp Ori: ACB54111.1 Feature: domain Description: TIGR00106 Location: 4930576-4930858 bp Feature: domain Description: TIGR001 06 Location: 4930576-4930858 bp Feature: gene Location: 4931046-4931261 bp Feature: gene Location: 4931435-4933300 bp Ori: ACB54113.1 Feature: domain Description: RVT_N Location: 4931585-4931831 bp Feature: domain Description: RVT_N Location: 4931 585-4931 831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4931873-4932569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4931 873-4932569 bp Feature: domain Description: GIIM Note: maturase Location: 4932668-4932905 bp Feature: domain Description: GIIM Note: maturase Location: 4932668-4932905 bp Feature: domain Description: HNHc Note: nucleases Location: 4933091-4933250 bp Feature: domain Description: HNHc Note: nucleases Location: 4933091 -4933250 bp Feature: gene Location: 4933473-4934099 bp Ori: ACB54114.1 Feature: domain Description: Abhydrolase_1 Location: 4933593-4933824 bp Feature: domain Description: Abhydrolase_1 Location: 4933593-4933824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT McrA (COG4058), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK10502 (putative acyl transferase; Provisional), Beta4Glucosyltransferase (cd02511), psbA (TIGR01151), DDE_Tnp_4 (pfam13359), HTH_Tnp_4 (pfam13613)
PRK00885 (phosphoribosylamine--glycine ligase; Provisional), PRK04447 (hypothetical protein; Provisional), RVT-Retrons, COG1569 (Predicted nucleic acid-binding protein, contains PIN domain ), PutA (COG0506), D1pyr5carbox2 (TIGR01237), HicB_lk_antitox (pfam15919), RVT-UG16, MoaB (COG0521), PRK13612 (photosystem II reaction center protein Psb28; Provisional)
recR (TIGR00615), HTH_XRE (smart00530), EF-G_bact (cd04170), HNHc (smart00507), PRK12740 (elongation factor G-like protein EF-G2), COG2929 (Uncharacterized conserved protein, DUF497 family ), Uma2 (pfam05685), FrhB (COG1035), YpfJ (COG2321), LON (smart00464)
TIGR00106 (uncharacterized protein, MTH1187 family), Abhydrolase_1 (pfam00561)