myRT

myRT report for GCA_000018025.1_ASM1802v1

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Seq: CP000821.1 Shewanella sediminis HAW-EB3, complete genome (5517674 bp)
Overview 1 RT 1: 1701194-1708306 bp 2 RT 2: 3107652-3113306 bp 3 RT 3: 3274951-3280398 bp 4 RT 4: 5161997-5171015 bp Neighborhood of RT #1 [1701194, 1708329] PRK00093 HTH_Cfa Methyltransf_25 RVT_N RVT-GII GIIM LbH_MAT_like LbH_MAT_like TsaA KOG2942 Neighborhood of RT #2 [3107652, 3113326] RVT_N RVT-GII GIIM USP_Like USP_Like SUL1 Neighborhood of RT #3 [3274951, 3280398] OYE_like_FMN EamA EamA RVT_N RVT-GII GIIM VOC_ShValD_like Neighborhood of RT #4 [5161997, 5171020] DAP2 SYLF RVT-AbiP2 PRK14991 Feature: gene Location: 1701194-1702660 bp Ori: ABV36047.1 Feature: domain Description: PRK00093 Location: 1701203-1702571 bp Feature: domain Description: PRK00093 Location: 1 701 203-1 702571 bp Feature: gene Location: 1703214-1704386 bp Ori: ABV36048.1 Feature: domain Description: HTH_Cfa Location: 1703217-1703520 bp Feature: domain Description: HTH_Cfa Location: 1 70321 7-1 703520 bp Feature: domain Description: Methyltransf_25 Location: 1703775-1704057 bp Feature: domain Description: Methyltransf_25 Location: 1 703775-1 704057 bp Feature: gene Location: 1705153-1706625 bp Ori: ABV36049.1 Feature: domain Description: RVT_N Location: 1705201-1705444 bp Feature: domain Description: RVT_N Location: 1 705201 -1 705444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1705489-1706116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 705489-1 7061 1 6 bp Feature: domain Description: GIIM Note: maturase Location: 1706173-1706401 bp Feature: domain Description: GIIM Note: maturase Location: 1 7061 73-1 706401 bp Feature: gene Location: 1706979-1707635 bp Ori: ABV36050.1 Feature: domain Description: LbH_MAT_like Location: 1707168-1707273 bp Feature: domain Description: LbH_MAT_like Location: 1 7071 68-1 707273 bp Feature: domain Description: LbH_MAT_like Location: 1707288-1707612 bp Feature: domain Description: LbH_MAT_like Location: 1 707288-1 70761 2 bp Feature: gene Location: 1707604-1708329 bp Ori: ABV36051.1 Feature: domain Description: TsaA Location: 1707610-1708078 bp Feature: domain Description: TsaA Location: 1 70761 0-1 708078 bp Feature: domain Description: KOG2942 Location: 1708084-1708306 bp Feature: domain Description: KOG2942 Location: 1 708084-1 708306 bp Feature: gene Location: 3107652-3108119 bp Feature: gene Location: 3108240-3108515 bp Feature: gene Location: 3109232-3110704 bp Ori: ABV37168.1 Feature: domain Description: RVT_N Location: 3109280-3109523 bp Feature: domain Description: RVT_N Location: 31 09280-31 09523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3109568-3110195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 09568-31 1 01 95 bp Feature: domain Description: GIIM Note: maturase Location: 3110252-3110480 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 0252-31 1 0480 bp Feature: gene Location: 3110980-3111825 bp Ori: ABV37169.1 Feature: domain Description: USP_Like Location: 3110989-3111445 bp Feature: domain Description: USP_Like Location: 31 1 0989-31 1 1 445 bp Feature: domain Description: USP_Like Location: 3111475-3111817 bp Feature: domain Description: USP_Like Location: 31 1 1 475-31 1 1 81 7 bp Feature: gene Location: 3111839-3113326 bp Ori: ABV37170.1 Feature: domain Description: SUL1 Location: 3111851-3113306 bp Feature: domain Description: SUL1 Location: 31 1 1 851 -31 1 3306 bp Feature: gene Location: 3274951-3276051 bp Ori: ABV37317.1 Feature: domain Description: OYE_like_FMN Location: 3274966-3275977 bp Feature: domain Description: OYE_like_FMN Location: 3274966-3275977 bp Feature: gene Location: 3276264-3277166 bp Ori: ABV37318.1 Feature: domain Description: EamA Location: 3276285-3276678 bp Feature: domain Description: EamA Location: 3276285-3276678 bp Feature: domain Description: EamA Location: 3276717-3277104 bp Feature: domain Description: EamA Location: 327671 7-32771 04 bp Feature: gene Location: 3277498-3278970 bp Ori: ABV37319.1 Feature: domain Description: RVT_N Location: 3277546-3277789 bp Feature: domain Description: RVT_N Location: 3277546-3277789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3277834-3278461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3277834-3278461 bp Feature: domain Description: GIIM Note: maturase Location: 3278518-3278746 bp Feature: domain Description: GIIM Note: maturase Location: 327851 8-3278746 bp Feature: gene Location: 3279644-3280129 bp Ori: ABV37320.1 Feature: domain Description: VOC_ShValD_like Location: 3279650-3280097 bp Feature: domain Description: VOC_ShValD_like Location: 3279650-3280097 bp Feature: gene Location: 3280216-3280398 bp Feature: gene Location: 5161997-5164063 bp Ori: ABV38808.1 Feature: domain Description: DAP2 Location: 5162096-5164004 bp Feature: domain Description: DAP2 Location: 51 62096-51 64004 bp Feature: gene Location: 5164209-5164775 bp Ori: ABV38809.1 Feature: domain Description: SYLF Location: 5164305-5164767 bp Feature: domain Description: SYLF Location: 51 64305-51 64767 bp Feature: gene Location: 5164940-5166439 bp Ori: ABV38810.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 5165360-5165810 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 51 65360-51 6581 0 bp Feature: gene Location: 5166932-5167522 bp Feature: gene Location: 5167982-5171020 bp Ori: ABV38812.1 Feature: domain Description: PRK14991 Location: 5168069-5171015 bp Feature: domain Description: PRK1 4991 Location: 51 68069-51 71 01 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00093 (GTP-binding protein Der; Reviewed), HTH_Cfa (cd04789), Methyltransf_25 (pfam13649), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LbH_MAT_like (cd04647), TsaA (COG1720), KOG2942 (KOG2942, Uncharacterized conserved protein ), USP_Like (cd00293)
SUL1 (COG0659), OYE_like_FMN (cd02933), EamA (pfam00892), VOC_ShValD_like (cd16361), DAP2 (COG1506), SYLF (COG2930), RVT-AbiP2, PRK14991 (tetrathionate reductase subunit TtrA)