myRT

myRT report for GCA_000018565.1_ASM1856v1

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Seq: CP000876.1 Herpetosiphon aurantiacus DSM 785 plasmid pHAU01, complete sequence (339639 bp)
Overview 1 RT 1: 212739-222030 bp Neighborhood of RT #1 [212739, 222030] AAA_16 AAA_16 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_10 TPR_12 RVT-Retrons DUF3800 Feature: gene Location: 212739-213917 bp Ori: ABX07776.1 Feature: domain Description: AAA_16 Location: 213084-213540 bp Feature: domain Description: AAA_1 6 Location: 21 3084-21 3540 bp Feature: gene Location: 213995-217312 bp Ori: ABX07777.1 Feature: domain Description: AAA_16 Location: 214631-214781 bp Feature: domain Description: AAA_1 6 Location: 21 4631 -21 4781 bp Feature: domain Description: TPR_12 Location: 215726-215951 bp Feature: domain Description: TPR_1 2 Location: 21 5726-21 5951 bp Feature: domain Description: TPR_12 Location: 215981-216203 bp Feature: domain Description: TPR_1 2 Location: 21 5981 -21 6203 bp Feature: domain Description: TPR_12 Location: 216233-216455 bp Feature: domain Description: TPR_1 2 Location: 21 6233-21 6455 bp Feature: domain Description: TPR_12 Location: 216482-216707 bp Feature: domain Description: TPR_1 2 Location: 21 6482-21 6707 bp Feature: domain Description: TPR_12 Location: 216740-216947 bp Feature: domain Description: TPR_1 2 Location: 21 6740-21 6947 bp Feature: domain Description: TPR_10 Location: 216989-217112 bp Feature: domain Description: TPR_1 0 Location: 21 6989-21 71 1 2 bp Feature: domain Description: TPR_12 Location: 217112-217280 bp Feature: domain Description: TPR_1 2 Location: 21 71 1 2-21 7280 bp Feature: gene Location: 217654-219408 bp Ori: ABX07778.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 217819-218416 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 781 9-21 841 6 bp Feature: gene Location: 219460-220587 bp Ori: ABX07779.1 Feature: domain Description: DUF3800 Location: 219469-220330 bp Feature: domain Description: DUF3800 Location: 21 9469-220330 bp Feature: gene Location: 220882-222030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_16 (pfam13191), TPR_12 (pfam13424), TPR_10 (pfam13374), RVT-Retrons, DUF3800 (pfam12686)

Seq: CP000875.1 Herpetosiphon aurantiacus DSM 785, complete genome (6346587 bp)
Overview 1 RT 1: 164250-171094 bp 2 RT 2: 2313852-2321512 bp 3 RT 3: 3035488-3040763 bp 4 RT 4: 3375828-3382643 bp 5 RT 5: 6104537-6111709 bp Neighborhood of RT #1 [164250, 171135] LeuB RVT_N RVT-GII YkfC HNHc NB-ARC TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 DUF4386 Neighborhood of RT #2 [2313852, 2321517] TIGR03984 TIGR03986 RVT-GII Intron_maturas2 KOG4768 Csx1_III-U tpiA Neighborhood of RT #3 [3035488, 3040807] RVT-CRISPR RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #4 [3375828, 3383029] YigB APH RVT-CRISPR-like PLN02245 CopC PcoD Neighborhood of RT #5 [6104537, 6111711] HomoserineK_II SrkA RVT_N RVT-GII YkfC HNHc PRK12704 Feature: gene Location: 164250-165329 bp Ori: ABX02785.1 Feature: domain Description: LeuB Location: 164259-165294 bp Feature: domain Description: LeuB Location: 1642 59-1652 94 bp Feature: gene Location: 165545-165919 bp Feature: gene Location: 166364-168046 bp Ori: ABX02787.1 Feature: domain Description: RVT_N Location: 166415-166658 bp Feature: domain Description: RVT_N Location: 166415-166658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166703-167345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166703-167345 bp Feature: domain Description: YkfC Location: 167348-167639 bp Feature: domain Description: YkfC Location: 167348-167639 bp Feature: domain Description: HNHc Note: nucleases Location: 167840-167999 bp Feature: domain Description: HNHc Note: nucleases Location: 167840-167999 bp Feature: gene Location: 168061-170391 bp Ori: ABX02788.1 Feature: domain Description: NB-ARC Location: 168286-168859 bp Feature: domain Description: NB-ARC Location: 1682 86-168859 bp Feature: domain Description: TPR_10 Location: 169369-169456 bp Feature: domain Description: TPR_10 Location: 169369-169456 bp Feature: domain Description: TPR_10 Location: 169465-169585 bp Feature: domain Description: TPR_10 Location: 169465-169585 bp Feature: domain Description: TPR_10 Location: 169618-169711 bp Feature: domain Description: TPR_10 Location: 169618-169711 bp Feature: domain Description: TPR_10 Location: 169723-169837 bp Feature: domain Description: TPR_10 Location: 16972 3-169837 bp Feature: domain Description: TPR_10 Location: 169840-169960 bp Feature: domain Description: TPR_10 Location: 169840-169960 bp Feature: domain Description: TPR_10 Location: 169966-170089 bp Feature: domain Description: TPR_10 Location: 169966-170089 bp Feature: domain Description: TPR_10 Location: 170098-170215 bp Feature: domain Description: TPR_10 Location: 170098-1702 15 bp Feature: domain Description: TPR_10 Location: 170221-170335 bp Feature: domain Description: TPR_10 Location: 1702 2 1-170335 bp Feature: gene Location: 170476-171135 bp Ori: ABX02789.1 Feature: domain Description: DUF4386 Location: 170506-171094 bp Feature: domain Description: DUF4386 Location: 170506-171094 bp Feature: gene Location: 2313852-2314502 bp Ori: ABX04562.1 Feature: domain Description: TIGR03984 Location: 2313933-2314476 bp Feature: domain Description: TIGR03984 Location: 2 313933-2 314476 bp Feature: gene Location: 2314499-2316658 bp Ori: ABX04563.1 Feature: domain Description: TIGR03986 Location: 2314553-2316389 bp Feature: domain Description: TIGR03986 Location: 2 314553-2 316389 bp Feature: gene Location: 2317173-2318960 bp Ori: ABX04564.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2317434-2318229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 317434-2 3182 2 9 bp Feature: domain Description: Intron_maturas2 Location: 2318331-2318547 bp Feature: domain Description: Intron_maturas2 Location: 2 318331-2 318547 bp Feature: domain Description: KOG4768 Location: 2318757-2318934 bp Feature: domain Description: KOG4768 Location: 2 318757-2 318934 bp Feature: gene Location: 2319240-2320493 bp Ori: ABX04565.1 Feature: domain Description: Csx1_III-U Location: 2319255-2320206 bp Feature: domain Description: Csx1_III-U Location: 2 3192 55-2 32 02 06 bp Feature: gene Location: 2320765-2321517 bp Ori: ABX04566.1 Feature: domain Description: tpiA Location: 2320771-2321512 bp Feature: domain Description: tpiA Location: 2 32 0771-2 32 1512 bp Feature: gene Location: 3035488-3036912 bp Feature: gene Location: 3036913-3037893 bp Feature: gene Location: 3037877-3039172 bp Ori: ABX05025.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3038120-3038459 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 303812 0-3038459 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3038801-3039068 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3038801-3039068 bp Feature: gene Location: 3039256-3040257 bp Ori: ABX05026.1 Feature: domain Description: Cas1_I-II-III Location: 3039265-3040219 bp Feature: domain Description: Cas1_I-II-III Location: 30392 65-30402 19 bp Feature: gene Location: 3040529-3040807 bp Ori: ABX05027.1 Feature: domain Description: Cas2_I_II_III Location: 3040538-3040763 bp Feature: domain Description: Cas2 _I_II_III Location: 3040538-3040763 bp Feature: gene Location: 3375828-3376535 bp Ori: ABX05269.1 Feature: domain Description: YigB Location: 3375846-3376497 bp Feature: domain Description: YigB Location: 3375846-3376497 bp Feature: gene Location: 3376517-3377527 bp Ori: ABX05270.1 Feature: domain Description: APH Location: 3376727-3377369 bp Feature: domain Description: APH Location: 337672 7-3377369 bp Feature: gene Location: 3377924-3380284 bp Ori: ABX05271.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3379091-3379502 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3379091-3379502 bp Feature: gene Location: 3380313-3381314 bp Ori: ABX05272.1 Feature: domain Description: PLN02245 Location: 3380319-3381291 bp Feature: domain Description: PLN02 2 45 Location: 3380319-33812 91 bp Feature: gene Location: 3381314-3383029 bp Ori: ABX05273.1 Feature: domain Description: CopC Location: 3381329-3381668 bp Feature: domain Description: CopC Location: 338132 9-3381668 bp Feature: domain Description: PcoD Location: 3381830-3382643 bp Feature: domain Description: PcoD Location: 3381830-3382 643 bp Feature: gene Location: 6104537-6105265 bp Ori: ABX07420.1 Feature: domain Description: HomoserineK_II Location: 6104564-6105254 bp Feature: domain Description: HomoserineK_II Location: 6104564-61052 54 bp Feature: gene Location: 6105275-6105580 bp Ori: ABX07421.1 Feature: domain Description: SrkA Location: 6105311-6105533 bp Feature: domain Description: SrkA Location: 6105311-6105533 bp Feature: gene Location: 6106257-6107939 bp Ori: ABX07422.1 Feature: domain Description: RVT_N Location: 6106308-6106551 bp Feature: domain Description: RVT_N Location: 6106308-6106551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6106596-6107238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6106596-61072 38 bp Feature: domain Description: YkfC Location: 6107241-6107532 bp Feature: domain Description: YkfC Location: 61072 41-6107532 bp Feature: domain Description: HNHc Note: nucleases Location: 6107733-6107892 bp Feature: domain Description: HNHc Note: nucleases Location: 6107733-6107892 bp Feature: gene Location: 6108220-6109212 bp Feature: gene Location: 6110182-6111711 bp Ori: ABX07424.1 Feature: domain Description: PRK12704 Location: 6110203-6111709 bp Feature: domain Description: PRK12 704 Location: 61102 03-6111709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LeuB (COG0473), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), NB-ARC (pfam00931), TPR_10 (pfam13374), DUF4386 (pfam14329), TIGR03984 (CRISPR-associated protein, TIGR03984 family), TIGR03986 (CRISPR-associated protein)
Intron_maturas2 (pfam01348), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Csx1_III-U (cl21570), tpiA (PRK00042), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), YigB (COG1011), APH (pfam01636), PLN02245 (ATP phosphoribosyl transferase)
CopC (pfam04234), PcoD (COG1276), HomoserineK_II (cd05153), SrkA (COG2334), PRK12704 (phosphodiesterase; Provisional)

Seq: CP000877.1 Herpetosiphon aurantiacus DSM 785 plasmid pHAU02, complete sequence (99204 bp)
Overview 1 RT 1: 6308-13115 bp Neighborhood of RT #1 [6308, 13822] VirB4 RVT-GII GIIM McrA Sortase_D_2 Feature: gene Location: 6308-8647 bp Ori: ABX07867.1 Feature: domain Description: VirB4 Location: 7523-8420 bp Feature: domain Description: VirB4 Location: 7523 -8420 bp Feature: gene Location: 8644-9060 bp Feature: gene Location: 9353-11116 bp Ori: ABX07869.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9668-10352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9668-103 52 bp Feature: domain Description: GIIM Note: maturase Location: 10463-10607 bp Feature: domain Description: GIIM Note: maturase Location: 10463 -10607 bp Feature: domain Description: McrA Location: 10898-11111 bp Feature: domain Description: McrA Location: 10898-11111 bp Feature: gene Location: 11702-11992 bp Feature: gene Location: 12227-13822 bp Ori: ABX07871.1 Feature: domain Description: Sortase_D_2 Location: 12941-13115 bp Feature: domain Description: Sortase_D_2 Location: 12941-13 115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, GIIM (pfam08388), McrA (COG4058), Sortase_D_2 (cd06166)