myRT

myRT report for GCA_000018605.1_ASM1860v1

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Seq: CP000879.1 Petrotoga mobilis SJ95, complete genome (2169548 bp)
Overview 1 RT 1: 458752-463514 bp 2 RT 2: 1341309-1347817 bp 3 RT 3: 1356856-1361452 bp Neighborhood of RT #1 [458752, 463963] Phage_holin_4_1 PGRP LysM RVT-GII GIIM SHOCT Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #2 [1341309, 1347849] PhoA InsQ RVT-GII GIIM PRK03767 COG4584 PRK09183 Neighborhood of RT #3 [1356856, 1361452] DDE_Tnp_1 TRX_family RVT-GII GIIM ParE-like_toxin Feature: gene Location: 458752-459171 bp Ori: ABX31164.1 Feature: domain Description: Phage_holin_4_1 Location: 458806-459139 bp Feature: domain Description: Phage_holin_4_1 Location: 458806-4591 39 bp Feature: gene Location: 459168-460172 bp Ori: ABX31165.1 Feature: domain Description: PGRP Location: 459234-459627 bp Feature: domain Description: PGRP Location: 459234-459627 bp Feature: domain Description: LysM Location: 460026-460164 bp Feature: domain Description: LysM Location: 460026-4601 64 bp Feature: gene Location: 460248-461666 bp Ori: ABX31166.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460599-461217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460599-461 21 7 bp Feature: domain Description: GIIM Note: maturase Location: 461268-461496 bp Feature: domain Description: GIIM Note: maturase Location: 461 268-461 496 bp Feature: gene Location: 462115-462333 bp Ori: ABX31167.1 Feature: domain Description: SHOCT Location: 462223-462277 bp Feature: domain Description: SHOCT Location: 462223-462277 bp Feature: gene Location: 462395-463963 bp Ori: ABX31168.1 Feature: domain Description: Resolvase Location: 462461-462908 bp Feature: domain Description: Resolvase Location: 462461 -462908 bp Feature: domain Description: Recombinase Location: 462968-463283 bp Feature: domain Description: Recombinase Location: 462968-463283 bp Feature: domain Description: Zn_ribbon_recom Location: 463337-463514 bp Feature: domain Description: Zn_ribbon_recom Location: 463337-46351 4 bp Feature: gene Location: 1341309-1342316 bp Ori: ABX31968.1 Feature: domain Description: PhoA Location: 1341318-1342281 bp Feature: domain Description: PhoA Location: 1 341 31 8-1 342281 bp Feature: gene Location: 1342461-1343597 bp Ori: ABX31969.1 Feature: domain Description: InsQ Location: 1342464-1343568 bp Feature: domain Description: InsQ Location: 1 342464-1 343568 bp Feature: gene Location: 1343879-1345297 bp Ori: ABX31970.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1344230-1344848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 344230-1 344848 bp Feature: domain Description: GIIM Note: maturase Location: 1344899-1345124 bp Feature: domain Description: GIIM Note: maturase Location: 1 344899-1 3451 24 bp Feature: gene Location: 1345747-1346361 bp Ori: ABX31971.1 Feature: domain Description: PRK03767 Location: 1345750-1346356 bp Feature: domain Description: PRK03767 Location: 1 345750-1 346356 bp Feature: gene Location: 1346644-1347849 bp Ori: ABX31972.1 Feature: domain Description: COG4584 Location: 1346701-1347229 bp Feature: domain Description: COG4584 Location: 1 346701 -1 347229 bp Feature: domain Description: PRK09183 Location: 1347235-1347817 bp Feature: domain Description: PRK091 83 Location: 1 347235-1 34781 7 bp Feature: gene Location: 1356856-1357680 bp Ori: ABX31980.1 Feature: domain Description: DDE_Tnp_1 Location: 1356991-1357585 bp Feature: domain Description: DDE_Tnp_1 Location: 1 356991 -1 357585 bp Feature: gene Location: 1358045-1358332 bp Ori: ABX31981.1 Feature: domain Description: TRX_family Location: 1358057-1358291 bp Feature: domain Description: TRX_family Location: 1 358057-1 358291 bp Feature: gene Location: 1358393-1359811 bp Ori: ABX31982.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1358744-1359362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 358744-1 359362 bp Feature: domain Description: GIIM Note: maturase Location: 1359413-1359641 bp Feature: domain Description: GIIM Note: maturase Location: 1 35941 3-1 359641 bp Feature: gene Location: 1360472-1360870 bp Ori: ABX31983.1 Feature: domain Description: ParE-like_toxin Location: 1360562-1360814 bp Feature: domain Description: ParE-like_toxin Location: 1 360562-1 36081 4 bp Feature: gene Location: 1360883-1361452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), PGRP (smart00701), LysM (smart00257), RVT-GII, GIIM (pfam08388), SHOCT (pfam09851), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), PhoA (COG1785)
InsQ (COG0675), PRK03767 (NAD(P)H:quinone oxidoreductase; Provisional), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), DDE_Tnp_1 (pfam01609), TRX_family (cd02947), ParE-like_toxin (pfam15781)